Results 61 - 80 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 71269 | 0.66 | 0.720083 |
Target: 5'- uGAGGUCcgcGCGGUC-CCGAUACGGaaAAu -3' miRNA: 3'- -UUCCGG---UGCCAGuGGCUGUGCCggUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 71384 | 0.68 | 0.63058 |
Target: 5'- cAGGaccuccuCCACGGUCugCGGCucgggcCGGCCGu -3' miRNA: 3'- uUCC-------GGUGCCAGugGCUGu-----GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 75352 | 0.71 | 0.415217 |
Target: 5'- -cGGCgACGGUucgcCACCGACccgccGCGGCCGg -3' miRNA: 3'- uuCCGgUGCCA----GUGGCUG-----UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 75475 | 0.68 | 0.601801 |
Target: 5'- ---aCCACGG-CGCCGAgACGGCCc- -3' miRNA: 3'- uuccGGUGCCaGUGGCUgUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 76536 | 0.83 | 0.077815 |
Target: 5'- -cGGCCGCGG-CGCCGACGCGGUCGc -3' miRNA: 3'- uuCCGGUGCCaGUGGCUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 78681 | 0.67 | 0.681101 |
Target: 5'- -cGGCCGcCGGcCgcaugugcgGCCGACACGGCg-- -3' miRNA: 3'- uuCCGGU-GCCaG---------UGGCUGUGCCGguu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 79441 | 0.66 | 0.757927 |
Target: 5'- -cGGCgGCGGcgACCGGCGCGGagaCGAc -3' miRNA: 3'- uuCCGgUGCCagUGGCUGUGCCg--GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 80023 | 0.69 | 0.551712 |
Target: 5'- gGAGGCCGgGGagaccacUCGCCGACAgugcCGGCgCGAg -3' miRNA: 3'- -UUCCGGUgCC-------AGUGGCUGU----GCCG-GUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 80431 | 0.68 | 0.581062 |
Target: 5'- cGGGGCCgccgccgGCGGcCGCCGGCccgucgGCGGCCc- -3' miRNA: 3'- -UUCCGG-------UGCCaGUGGCUG------UGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 82575 | 0.67 | 0.675188 |
Target: 5'- cGAGGCCgACGc-CGCCGAgacggagacccucucCGCGGCCGAa -3' miRNA: 3'- -UUCCGG-UGCcaGUGGCU---------------GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 83651 | 0.69 | 0.562427 |
Target: 5'- -cGG-CGCGGUCACCGACcUGGUCu- -3' miRNA: 3'- uuCCgGUGCCAGUGGCUGuGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 85962 | 0.7 | 0.467885 |
Target: 5'- cGGGGCCGCGGcCcucucaucggACCGcCGCGGCCc- -3' miRNA: 3'- -UUCCGGUGCCaG----------UGGCuGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 87019 | 0.66 | 0.745785 |
Target: 5'- -cGGCgAgGGUCcgcaggauccggggACCGGCGCGGCUc- -3' miRNA: 3'- uuCCGgUgCCAG--------------UGGCUGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 94017 | 0.67 | 0.681101 |
Target: 5'- cGGGCCgGCGGguucCGCCGGCG-GGCCc- -3' miRNA: 3'- uUCCGG-UGCCa---GUGGCUGUgCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 95763 | 0.68 | 0.611713 |
Target: 5'- cGGGGCgGCGGcCG-CGACGgCGGCCGGg -3' miRNA: 3'- -UUCCGgUGCCaGUgGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 95827 | 0.67 | 0.651436 |
Target: 5'- -cGGCCGgGGgagCGgCGGCGgCGGCCGGg -3' miRNA: 3'- uuCCGGUgCCa--GUgGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 99545 | 0.69 | 0.542991 |
Target: 5'- cGGGCCGCGGaaACCG-CGCGcGCCc- -3' miRNA: 3'- uUCCGGUGCCagUGGCuGUGC-CGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 99807 | 0.72 | 0.374212 |
Target: 5'- --cGCCGCGGgCGCCGGCGCcgucGGCCGAc -3' miRNA: 3'- uucCGGUGCCaGUGGCUGUG----CCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 103552 | 0.68 | 0.59191 |
Target: 5'- gAAGGCCACcauGG-CGuCCGACGCcguGGCCGAc -3' miRNA: 3'- -UUCCGGUG---CCaGU-GGCUGUG---CCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 104490 | 0.67 | 0.690924 |
Target: 5'- -cGGCCACGGcgGCCGGguCGGgCGAg -3' miRNA: 3'- uuCCGGUGCCagUGGCUguGCCgGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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