miRNA display CGI


Results 81 - 100 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 107056 0.66 0.729671
Target:  5'- gGAGGCgGCGGgcgcggcgcCGCCGGCAUGucggaGCCGAc -3'
miRNA:   3'- -UUCCGgUGCCa--------GUGGCUGUGC-----CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 108454 0.75 0.262343
Target:  5'- -cGGCgGCGGccCGCCGGCACgGGCCGAg -3'
miRNA:   3'- uuCCGgUGCCa-GUGGCUGUG-CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 108862 0.69 0.566338
Target:  5'- -uGGCgCGCGGUCACCGgguccaacucggcguGCGCGGUg-- -3'
miRNA:   3'- uuCCG-GUGCCAGUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 109266 0.68 0.631574
Target:  5'- uGGuGaCCACGGUCuuggagcucuccGCCGACGCgcuGGCCAAc -3'
miRNA:   3'- uUC-C-GGUGCCAG------------UGGCUGUG---CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 111614 0.71 0.441105
Target:  5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3'
miRNA:   3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 111656 0.67 0.67124
Target:  5'- -cGGCCGCGGccaCGCCcgucgGAUACGGUCGu -3'
miRNA:   3'- uuCCGGUGCCa--GUGG-----CUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 113179 0.66 0.748602
Target:  5'- -cGGCgGCGGUCGCgGAgGCGccuccGCCGc -3'
miRNA:   3'- uuCCGgUGCCAGUGgCUgUGC-----CGGUu -5'
11136 3' -60.6 NC_002794.1 + 113883 0.7 0.486194
Target:  5'- -cGGCCGCGGcgCGCguCGGCGCGGUCu- -3'
miRNA:   3'- uuCCGGUGCCa-GUG--GCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 113914 0.66 0.739181
Target:  5'- gAAGGCCuccagguCGGcCGCCGAgGCgacgGGCCGc -3'
miRNA:   3'- -UUCCGGu------GCCaGUGGCUgUG----CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 115051 0.66 0.7007
Target:  5'- cGGGCgGCGGgcggcagCGCCGuccagucCACGGCCu- -3'
miRNA:   3'- uUCCGgUGCCa------GUGGCu------GUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 116070 0.71 0.458864
Target:  5'- uGGGGUCGCGGagCGCuCGGCGCGGCgGu -3'
miRNA:   3'- -UUCCGGUGCCa-GUG-GCUGUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 116129 0.67 0.661349
Target:  5'- --cGCCGCGGcggCGgCGGCGgCGGCCAGg -3'
miRNA:   3'- uucCGGUGCCa--GUgGCUGU-GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 118269 0.66 0.757927
Target:  5'- cGGGGCgGCGG-CGCCGGCGuCGGggaCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUGGCUGU-GCC---GGUu -5'
11136 3' -60.6 NC_002794.1 + 120063 0.81 0.111512
Target:  5'- -cGGCCGCGGagGCCGACGCGGCgGu -3'
miRNA:   3'- uuCCGGUGCCagUGGCUGUGCCGgUu -5'
11136 3' -60.6 NC_002794.1 + 121428 0.71 0.415217
Target:  5'- cGGGaCCGCGGccacCACCGAgacCACGGCCGc -3'
miRNA:   3'- uUCC-GGUGCCa---GUGGCU---GUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 121977 0.71 0.423744
Target:  5'- -cGGCU-CGGUCccGCCGAgCGCGGCCGGg -3'
miRNA:   3'- uuCCGGuGCCAG--UGGCU-GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 125340 0.7 0.476996
Target:  5'- --cGCCACGGcgCACCGGCAgccgcUGGCCGu -3'
miRNA:   3'- uucCGGUGCCa-GUGGCUGU-----GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 125449 0.7 0.504837
Target:  5'- aAGGGCgACGG-CGgCGAgCACGGCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUgGCU-GUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 125746 0.66 0.757927
Target:  5'- cGGGCCGCGGgaCGgCGGCcgGCGGCUc- -3'
miRNA:   3'- uUCCGGUGCCa-GUgGCUG--UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 127274 0.66 0.720083
Target:  5'- --cGCgACGGUCACgGugACGGUgGAa -3'
miRNA:   3'- uucCGgUGCCAGUGgCugUGCCGgUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.