miRNA display CGI


Results 101 - 120 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 127354 0.66 0.720083
Target:  5'- --cGCuCGCGG-CGgCGGCGCGGCCGc -3'
miRNA:   3'- uucCG-GUGCCaGUgGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 127723 0.72 0.398485
Target:  5'- uGGGGCuCGCGGacggCACCGA-ACGGCCGGa -3'
miRNA:   3'- -UUCCG-GUGCCa---GUGGCUgUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 128259 0.69 0.572217
Target:  5'- -uGGUCGCGGUCgggGCCGAgCGCGgaGCCGAc -3'
miRNA:   3'- uuCCGGUGCCAG---UGGCU-GUGC--CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 129515 0.69 0.572217
Target:  5'- --cGCCGCGGUCggcgcGCUGACACGGUUc- -3'
miRNA:   3'- uucCGGUGCCAG-----UGGCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 130667 0.72 0.374212
Target:  5'- -cGGCCGCGGgcuCCGcCGCGGCCu- -3'
miRNA:   3'- uuCCGGUGCCaguGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 133996 0.67 0.690924
Target:  5'- aGAGGU--CGGUCGCCGggugcgagcgcuGCACGGUCGGg -3'
miRNA:   3'- -UUCCGguGCCAGUGGC------------UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 134206 0.66 0.7007
Target:  5'- gGGGGCCGuCGGUCGCCaa-GCGaccGCCGAu -3'
miRNA:   3'- -UUCCGGU-GCCAGUGGcugUGC---CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 137568 0.66 0.710423
Target:  5'- --cGCCGCcGUCGCCGcCGgGGCCGGa -3'
miRNA:   3'- uucCGGUGcCAGUGGCuGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 140013 0.69 0.542991
Target:  5'- gGAGGCCGCGGagGCC---GCGGCCc- -3'
miRNA:   3'- -UUCCGGUGCCagUGGcugUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 141036 0.66 0.7007
Target:  5'- cGAGGCCccgACGGUC-CUGACGuuuuUGGCCc- -3'
miRNA:   3'- -UUCCGG---UGCCAGuGGCUGU----GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 141312 0.69 0.533355
Target:  5'- -cGGCgACGG-CACCGGCGuCGGCUc- -3'
miRNA:   3'- uuCCGgUGCCaGUGGCUGU-GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 141427 0.66 0.733485
Target:  5'- gGGGGCgGCGGgggCGCCGggggcgccgggagcgGCGCGGCg-- -3'
miRNA:   3'- -UUCCGgUGCCa--GUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 141653 0.74 0.287509
Target:  5'- -uGGCCGCGGcCGCCGGCG-GGUCGAg -3'
miRNA:   3'- uuCCGGUGCCaGUGGCUGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 142155 0.69 0.523781
Target:  5'- gGAGGCgGCGGUagCACCGGCAgcguCGGCa-- -3'
miRNA:   3'- -UUCCGgUGCCA--GUGGCUGU----GCCGguu -5'
11136 3' -60.6 NC_002794.1 + 143267 0.69 0.562427
Target:  5'- gAAGGCC-CGG-C-CCGGCGcCGGCCGc -3'
miRNA:   3'- -UUCCGGuGCCaGuGGCUGU-GCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 145468 0.67 0.681101
Target:  5'- -uGGa-GCGGUCGCCGAa--GGCCGAg -3'
miRNA:   3'- uuCCggUGCCAGUGGCUgugCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 145735 0.69 0.533355
Target:  5'- gGAGGCgGCGG-CGCCGGCaucgACGGCg-- -3'
miRNA:   3'- -UUCCGgUGCCaGUGGCUG----UGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 147011 0.67 0.661349
Target:  5'- -cGGCgGCGGcCGCCGGCGCucGGUCu- -3'
miRNA:   3'- uuCCGgUGCCaGUGGCUGUG--CCGGuu -5'
11136 3' -60.6 NC_002794.1 + 149022 0.69 0.542991
Target:  5'- cGGGUCAUccUCACCGACuCGGCCGGa -3'
miRNA:   3'- uUCCGGUGccAGUGGCUGuGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 149881 0.67 0.67124
Target:  5'- gGGGGUCugGGUCAUCGugAcccgggauCGGCUg- -3'
miRNA:   3'- -UUCCGGugCCAGUGGCugU--------GCCGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.