miRNA display CGI


Results 121 - 140 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 151605 0.67 0.681101
Target:  5'- cGGGcCCGCGGUUcCuCGGCugACGGCCGg -3'
miRNA:   3'- uUCC-GGUGCCAGuG-GCUG--UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 154267 0.68 0.631574
Target:  5'- cGGGGUC-UGGUCccgaccGCCGGCGCGGCuCGAc -3'
miRNA:   3'- -UUCCGGuGCCAG------UGGCUGUGCCG-GUU- -5'
11136 3' -60.6 NC_002794.1 + 154327 0.68 0.601801
Target:  5'- -cGGCguCGGUCGucCCGGgugcCGCGGCCGAg -3'
miRNA:   3'- uuCCGguGCCAGU--GGCU----GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 156406 0.71 0.432374
Target:  5'- cGGcGCCGCGGcCGCgGcCACGGCCGg -3'
miRNA:   3'- uUC-CGGUGCCaGUGgCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 172465 0.66 0.748602
Target:  5'- cAGGUaACGGUCACCGugACcGCUu- -3'
miRNA:   3'- uUCCGgUGCCAGUGGCugUGcCGGuu -5'
11136 3' -60.6 NC_002794.1 + 176588 0.66 0.709453
Target:  5'- cGGGaugugacUCACGGagagCgGCCGGCACGGCCAu -3'
miRNA:   3'- uUCC-------GGUGCCa---G-UGGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 179783 0.67 0.690924
Target:  5'- uAGcGCC-CGGUCACCGucgucagguuccACACGGUCu- -3'
miRNA:   3'- uUC-CGGuGCCAGUGGC------------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 179835 0.69 0.572217
Target:  5'- -cGGCCuCGGUCAgCGugGCGCGGUUAAa -3'
miRNA:   3'- uuCCGGuGCCAGUgGC--UGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 180007 0.66 0.7007
Target:  5'- cGGGCC-CGGcCA-CGACgACGGCCGc -3'
miRNA:   3'- uUCCGGuGCCaGUgGCUG-UGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 180911 0.74 0.294091
Target:  5'- -cGGCCGCGGUCucGCCGGCGCcGUCGGa -3'
miRNA:   3'- uuCCGGUGCCAG--UGGCUGUGcCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 181364 0.66 0.739181
Target:  5'- -cGGCCcgguugAgGGUCACgGGCcCGGCCGu -3'
miRNA:   3'- uuCCGG------UgCCAGUGgCUGuGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 182193 0.7 0.476996
Target:  5'- cGGGGCCuCGG-CGCCGGCGuCGcGCCAc -3'
miRNA:   3'- -UUCCGGuGCCaGUGGCUGU-GC-CGGUu -5'
11136 3' -60.6 NC_002794.1 + 182220 0.66 0.757927
Target:  5'- cGGGGCUccgACGGUCagGCCGcaGCA-GGCCAGg -3'
miRNA:   3'- -UUCCGG---UGCCAG--UGGC--UGUgCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 182826 0.72 0.382191
Target:  5'- --aGCCGCGG-CACCGACACGaCCAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUGCcGGUu -5'
11136 3' -60.6 NC_002794.1 + 183864 0.68 0.611713
Target:  5'- -cGGCCGuCGGggccacCGCCGACACcGCCGc -3'
miRNA:   3'- uuCCGGU-GCCa-----GUGGCUGUGcCGGUu -5'
11136 3' -60.6 NC_002794.1 + 183917 0.7 0.476996
Target:  5'- uGGGaCACGGUCcCCGGCAgGGUCAc -3'
miRNA:   3'- uUCCgGUGCCAGuGGCUGUgCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 184028 0.66 0.710423
Target:  5'- --cGCCACGG-CACCGcgcgcagcGCGCGGUCg- -3'
miRNA:   3'- uucCGGUGCCaGUGGC--------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 184058 0.68 0.611713
Target:  5'- cGGGCCGCGGcgaAgCGGCACGcGCCc- -3'
miRNA:   3'- uUCCGGUGCCag-UgGCUGUGC-CGGuu -5'
11136 3' -60.6 NC_002794.1 + 184600 0.74 0.314537
Target:  5'- -cGGCCGCGGg-AUCGGCaACGGCCAGc -3'
miRNA:   3'- uuCCGGUGCCagUGGCUG-UGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 185175 0.66 0.739181
Target:  5'- -cGGCgcggCGCGGUCGgcgcggUCGGCGCGGUCAu -3'
miRNA:   3'- uuCCG----GUGCCAGU------GGCUGUGCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.