Results 41 - 60 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 130667 | 0.72 | 0.374212 |
Target: 5'- -cGGCCGCGGgcuCCGcCGCGGCCu- -3' miRNA: 3'- uuCCGGUGCCaguGGCuGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 129515 | 0.69 | 0.572217 |
Target: 5'- --cGCCGCGGUCggcgcGCUGACACGGUUc- -3' miRNA: 3'- uucCGGUGCCAG-----UGGCUGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 128259 | 0.69 | 0.572217 |
Target: 5'- -uGGUCGCGGUCgggGCCGAgCGCGgaGCCGAc -3' miRNA: 3'- uuCCGGUGCCAG---UGGCU-GUGC--CGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 127723 | 0.72 | 0.398485 |
Target: 5'- uGGGGCuCGCGGacggCACCGA-ACGGCCGGa -3' miRNA: 3'- -UUCCG-GUGCCa---GUGGCUgUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 127354 | 0.66 | 0.720083 |
Target: 5'- --cGCuCGCGG-CGgCGGCGCGGCCGc -3' miRNA: 3'- uucCG-GUGCCaGUgGCUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 127274 | 0.66 | 0.720083 |
Target: 5'- --cGCgACGGUCACgGugACGGUgGAa -3' miRNA: 3'- uucCGgUGCCAGUGgCugUGCCGgUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 125746 | 0.66 | 0.757927 |
Target: 5'- cGGGCCGCGGgaCGgCGGCcgGCGGCUc- -3' miRNA: 3'- uUCCGGUGCCa-GUgGCUG--UGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 125449 | 0.7 | 0.504837 |
Target: 5'- aAGGGCgACGG-CGgCGAgCACGGCCGc -3' miRNA: 3'- -UUCCGgUGCCaGUgGCU-GUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 125340 | 0.7 | 0.476996 |
Target: 5'- --cGCCACGGcgCACCGGCAgccgcUGGCCGu -3' miRNA: 3'- uucCGGUGCCa-GUGGCUGU-----GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 121977 | 0.71 | 0.423744 |
Target: 5'- -cGGCU-CGGUCccGCCGAgCGCGGCCGGg -3' miRNA: 3'- uuCCGGuGCCAG--UGGCU-GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 121428 | 0.71 | 0.415217 |
Target: 5'- cGGGaCCGCGGccacCACCGAgacCACGGCCGc -3' miRNA: 3'- uUCC-GGUGCCa---GUGGCU---GUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 120063 | 0.81 | 0.111512 |
Target: 5'- -cGGCCGCGGagGCCGACGCGGCgGu -3' miRNA: 3'- uuCCGGUGCCagUGGCUGUGCCGgUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 118269 | 0.66 | 0.757927 |
Target: 5'- cGGGGCgGCGG-CGCCGGCGuCGGggaCCGc -3' miRNA: 3'- -UUCCGgUGCCaGUGGCUGU-GCC---GGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 116129 | 0.67 | 0.661349 |
Target: 5'- --cGCCGCGGcggCGgCGGCGgCGGCCAGg -3' miRNA: 3'- uucCGGUGCCa--GUgGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 116070 | 0.71 | 0.458864 |
Target: 5'- uGGGGUCGCGGagCGCuCGGCGCGGCgGu -3' miRNA: 3'- -UUCCGGUGCCa-GUG-GCUGUGCCGgUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 115051 | 0.66 | 0.7007 |
Target: 5'- cGGGCgGCGGgcggcagCGCCGuccagucCACGGCCu- -3' miRNA: 3'- uUCCGgUGCCa------GUGGCu------GUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 113914 | 0.66 | 0.739181 |
Target: 5'- gAAGGCCuccagguCGGcCGCCGAgGCgacgGGCCGc -3' miRNA: 3'- -UUCCGGu------GCCaGUGGCUgUG----CCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 113883 | 0.7 | 0.486194 |
Target: 5'- -cGGCCGCGGcgCGCguCGGCGCGGUCu- -3' miRNA: 3'- uuCCGGUGCCa-GUG--GCUGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 113179 | 0.66 | 0.748602 |
Target: 5'- -cGGCgGCGGUCGCgGAgGCGccuccGCCGc -3' miRNA: 3'- uuCCGgUGCCAGUGgCUgUGC-----CGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 111656 | 0.67 | 0.67124 |
Target: 5'- -cGGCCGCGGccaCGCCcgucgGAUACGGUCGu -3' miRNA: 3'- uuCCGGUGCCa--GUGG-----CUGUGCCGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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