miRNA display CGI


Results 61 - 80 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 111614 0.71 0.441105
Target:  5'- cAGGCCgGCGGg-GCCGcCGCGGCCGc -3'
miRNA:   3'- uUCCGG-UGCCagUGGCuGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 109266 0.68 0.631574
Target:  5'- uGGuGaCCACGGUCuuggagcucuccGCCGACGCgcuGGCCAAc -3'
miRNA:   3'- uUC-C-GGUGCCAG------------UGGCUGUG---CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 108862 0.69 0.566338
Target:  5'- -uGGCgCGCGGUCACCGgguccaacucggcguGCGCGGUg-- -3'
miRNA:   3'- uuCCG-GUGCCAGUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 108454 0.75 0.262343
Target:  5'- -cGGCgGCGGccCGCCGGCACgGGCCGAg -3'
miRNA:   3'- uuCCGgUGCCa-GUGGCUGUG-CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 107056 0.66 0.729671
Target:  5'- gGAGGCgGCGGgcgcggcgcCGCCGGCAUGucggaGCCGAc -3'
miRNA:   3'- -UUCCGgUGCCa--------GUGGCUGUGC-----CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 104490 0.67 0.690924
Target:  5'- -cGGCCACGGcgGCCGGguCGGgCGAg -3'
miRNA:   3'- uuCCGGUGCCagUGGCUguGCCgGUU- -5'
11136 3' -60.6 NC_002794.1 + 103552 0.68 0.59191
Target:  5'- gAAGGCCACcauGG-CGuCCGACGCcguGGCCGAc -3'
miRNA:   3'- -UUCCGGUG---CCaGU-GGCUGUG---CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 99807 0.72 0.374212
Target:  5'- --cGCCGCGGgCGCCGGCGCcgucGGCCGAc -3'
miRNA:   3'- uucCGGUGCCaGUGGCUGUG----CCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 99545 0.69 0.542991
Target:  5'- cGGGCCGCGGaaACCG-CGCGcGCCc- -3'
miRNA:   3'- uUCCGGUGCCagUGGCuGUGC-CGGuu -5'
11136 3' -60.6 NC_002794.1 + 95827 0.67 0.651436
Target:  5'- -cGGCCGgGGgagCGgCGGCGgCGGCCGGg -3'
miRNA:   3'- uuCCGGUgCCa--GUgGCUGU-GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 95763 0.68 0.611713
Target:  5'- cGGGGCgGCGGcCG-CGACGgCGGCCGGg -3'
miRNA:   3'- -UUCCGgUGCCaGUgGCUGU-GCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 94017 0.67 0.681101
Target:  5'- cGGGCCgGCGGguucCGCCGGCG-GGCCc- -3'
miRNA:   3'- uUCCGG-UGCCa---GUGGCUGUgCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 87019 0.66 0.745785
Target:  5'- -cGGCgAgGGUCcgcaggauccggggACCGGCGCGGCUc- -3'
miRNA:   3'- uuCCGgUgCCAG--------------UGGCUGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 85962 0.7 0.467885
Target:  5'- cGGGGCCGCGGcCcucucaucggACCGcCGCGGCCc- -3'
miRNA:   3'- -UUCCGGUGCCaG----------UGGCuGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 83651 0.69 0.562427
Target:  5'- -cGG-CGCGGUCACCGACcUGGUCu- -3'
miRNA:   3'- uuCCgGUGCCAGUGGCUGuGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 82575 0.67 0.675188
Target:  5'- cGAGGCCgACGc-CGCCGAgacggagacccucucCGCGGCCGAa -3'
miRNA:   3'- -UUCCGG-UGCcaGUGGCU---------------GUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 80431 0.68 0.581062
Target:  5'- cGGGGCCgccgccgGCGGcCGCCGGCccgucgGCGGCCc- -3'
miRNA:   3'- -UUCCGG-------UGCCaGUGGCUG------UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 80023 0.69 0.551712
Target:  5'- gGAGGCCGgGGagaccacUCGCCGACAgugcCGGCgCGAg -3'
miRNA:   3'- -UUCCGGUgCC-------AGUGGCUGU----GCCG-GUU- -5'
11136 3' -60.6 NC_002794.1 + 79441 0.66 0.757927
Target:  5'- -cGGCgGCGGcgACCGGCGCGGagaCGAc -3'
miRNA:   3'- uuCCGgUGCCagUGGCUGUGCCg--GUU- -5'
11136 3' -60.6 NC_002794.1 + 78681 0.67 0.681101
Target:  5'- -cGGCCGcCGGcCgcaugugcgGCCGACACGGCg-- -3'
miRNA:   3'- uuCCGGU-GCCaG---------UGGCUGUGCCGguu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.