miRNA display CGI


Results 41 - 60 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 3' -60.6 NC_002794.1 + 79441 0.66 0.757927
Target:  5'- -cGGCgGCGGcgACCGGCGCGGagaCGAc -3'
miRNA:   3'- uuCCGgUGCCagUGGCUGUGCCg--GUU- -5'
11136 3' -60.6 NC_002794.1 + 11267 0.66 0.757927
Target:  5'- cGGGCgaCGCGGUCACCugguGGCGCGuccgcaacaccaGCCAGg -3'
miRNA:   3'- uUCCG--GUGCCAGUGG----CUGUGC------------CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 118269 0.66 0.757927
Target:  5'- cGGGGCgGCGG-CGCCGGCGuCGGggaCCGc -3'
miRNA:   3'- -UUCCGgUGCCaGUGGCUGU-GCC---GGUu -5'
11136 3' -60.6 NC_002794.1 + 49433 0.66 0.757927
Target:  5'- --nGUCACGG-CGuCCGGCGCGGUCGu -3'
miRNA:   3'- uucCGGUGCCaGU-GGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 125746 0.66 0.757927
Target:  5'- cGGGCCGCGGgaCGgCGGCcgGCGGCUc- -3'
miRNA:   3'- uUCCGGUGCCa-GUgGCUG--UGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 181364 0.66 0.739181
Target:  5'- -cGGCCcgguugAgGGUCACgGGCcCGGCCGu -3'
miRNA:   3'- uuCCGG------UgCCAGUGgCUGuGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 18687 0.66 0.739181
Target:  5'- --cGCCGCcGUCuCCGGCACGGCg-- -3'
miRNA:   3'- uucCGGUGcCAGuGGCUGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 49164 0.66 0.720083
Target:  5'- cGGGCCGucCGGgagGCCGAgccCACGGCCu- -3'
miRNA:   3'- uUCCGGU--GCCag-UGGCU---GUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 184028 0.66 0.710423
Target:  5'- --cGCCACGG-CACCGcgcgcagcGCGCGGUCg- -3'
miRNA:   3'- uucCGGUGCCaGUGGC--------UGUGCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 22577 0.66 0.720083
Target:  5'- -cGGCCGCuGUCcaagucgcGCuCGGCACGGUCGGg -3'
miRNA:   3'- uuCCGGUGcCAG--------UG-GCUGUGCCGGUU- -5'
11136 3' -60.6 NC_002794.1 + 127274 0.66 0.720083
Target:  5'- --cGCgACGGUCACgGugACGGUgGAa -3'
miRNA:   3'- uucCGgUGCCAGUGgCugUGCCGgUU- -5'
11136 3' -60.6 NC_002794.1 + 71269 0.66 0.720083
Target:  5'- uGAGGUCcgcGCGGUC-CCGAUACGGaaAAu -3'
miRNA:   3'- -UUCCGG---UGCCAGuGGCUGUGCCggUU- -5'
11136 3' -60.6 NC_002794.1 + 11790 0.66 0.720083
Target:  5'- --cGCCGCGGUguCCGugGCGccGCCGc -3'
miRNA:   3'- uucCGGUGCCAguGGCugUGC--CGGUu -5'
11136 3' -60.6 NC_002794.1 + 31983 0.66 0.720083
Target:  5'- cGAGcGCCuCGGUCugCGugGgCGaGCCGAc -3'
miRNA:   3'- -UUC-CGGuGCCAGugGCugU-GC-CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 41344 0.66 0.729671
Target:  5'- cGGGGucuCCGgGGUCACCGcCGuCGGCCu- -3'
miRNA:   3'- -UUCC---GGUgCCAGUGGCuGU-GCCGGuu -5'
11136 3' -60.6 NC_002794.1 + 127354 0.66 0.720083
Target:  5'- --cGCuCGCGG-CGgCGGCGCGGCCGc -3'
miRNA:   3'- uucCG-GUGCCaGUgGCUGUGCCGGUu -5'
11136 3' -60.6 NC_002794.1 + 107056 0.66 0.729671
Target:  5'- gGAGGCgGCGGgcgcggcgcCGCCGGCAUGucggaGCCGAc -3'
miRNA:   3'- -UUCCGgUGCCa--------GUGGCUGUGC-----CGGUU- -5'
11136 3' -60.6 NC_002794.1 + 141427 0.66 0.733485
Target:  5'- gGGGGCgGCGGgggCGCCGggggcgccgggagcgGCGCGGCg-- -3'
miRNA:   3'- -UUCCGgUGCCa--GUGGC---------------UGUGCCGguu -5'
11136 3' -60.6 NC_002794.1 + 62581 0.66 0.739181
Target:  5'- cAGcGCCGCcGcCGCCGACGCcagGGCCAc -3'
miRNA:   3'- uUC-CGGUGcCaGUGGCUGUG---CCGGUu -5'
11136 3' -60.6 NC_002794.1 + 113914 0.66 0.739181
Target:  5'- gAAGGCCuccagguCGGcCGCCGAgGCgacgGGCCGc -3'
miRNA:   3'- -UUCCGGu------GCCaGUGGCUgUG----CCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.