Results 101 - 120 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 65997 | 0.67 | 0.681101 |
Target: 5'- uGGGCgGugauccCGG-CACCGAgGCGGCCGc -3' miRNA: 3'- uUCCGgU------GCCaGUGGCUgUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 82575 | 0.67 | 0.675188 |
Target: 5'- cGAGGCCgACGc-CGCCGAgacggagacccucucCGCGGCCGAa -3' miRNA: 3'- -UUCCGG-UGCcaGUGGCU---------------GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 51344 | 0.67 | 0.680116 |
Target: 5'- -uGGaCCACGGcCAaagccgcCCGAgGCGGCCGc -3' miRNA: 3'- uuCC-GGUGCCaGU-------GGCUgUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 111656 | 0.67 | 0.67124 |
Target: 5'- -cGGCCGCGGccaCGCCcgucgGAUACGGUCGu -3' miRNA: 3'- uuCCGGUGCCa--GUGG-----CUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 149881 | 0.67 | 0.67124 |
Target: 5'- gGGGGUCugGGUCAUCGugAcccgggauCGGCUg- -3' miRNA: 3'- -UUCCGGugCCAGUGGCugU--------GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 104490 | 0.67 | 0.690924 |
Target: 5'- -cGGCCACGGcgGCCGGguCGGgCGAg -3' miRNA: 3'- uuCCGGUGCCagUGGCUguGCCgGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 194110 | 0.66 | 0.7007 |
Target: 5'- -cGuGCUGCGG-CACCGcgcGCACGGCUGAg -3' miRNA: 3'- uuC-CGGUGCCaGUGGC---UGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 176588 | 0.66 | 0.709453 |
Target: 5'- cGGGaugugacUCACGGagagCgGCCGGCACGGCCAu -3' miRNA: 3'- uUCC-------GGUGCCa---G-UGGCUGUGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 189852 | 0.66 | 0.707512 |
Target: 5'- -cGGCCGCGGagccgucggcgucgUCgccGCCGAC-CGGCCc- -3' miRNA: 3'- uuCCGGUGCC--------------AG---UGGCUGuGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 44709 | 0.66 | 0.7007 |
Target: 5'- -cGGCCGCGaccgCGgCGACGuCGGCCGg -3' miRNA: 3'- uuCCGGUGCca--GUgGCUGU-GCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 12891 | 0.66 | 0.7007 |
Target: 5'- -cGGaCCACGaccCGCuCGACugGGCCGAg -3' miRNA: 3'- uuCC-GGUGCca-GUG-GCUGugCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 36908 | 0.66 | 0.7007 |
Target: 5'- aGAGGUCGCGG-CGCCGGCcccGCGaCCGc -3' miRNA: 3'- -UUCCGGUGCCaGUGGCUG---UGCcGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 141036 | 0.66 | 0.7007 |
Target: 5'- cGAGGCCccgACGGUC-CUGACGuuuuUGGCCc- -3' miRNA: 3'- -UUCCGG---UGCCAGuGGCUGU----GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 180007 | 0.66 | 0.7007 |
Target: 5'- cGGGCC-CGGcCA-CGACgACGGCCGc -3' miRNA: 3'- uUCCGGuGCCaGUgGCUG-UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 60119 | 0.66 | 0.7007 |
Target: 5'- cGAGGUCAUccucaCGCCGGuCACGGCCGAc -3' miRNA: 3'- -UUCCGGUGcca--GUGGCU-GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 134206 | 0.66 | 0.7007 |
Target: 5'- gGGGGCCGuCGGUCGCCaa-GCGaccGCCGAu -3' miRNA: 3'- -UUCCGGU-GCCAGUGGcugUGC---CGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 47945 | 0.66 | 0.7007 |
Target: 5'- cGGcGCCGCGcGUC-CCGGCGcCGGCUGGg -3' miRNA: 3'- uUC-CGGUGC-CAGuGGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 5055 | 0.66 | 0.7007 |
Target: 5'- uGGGGCCuuugacUCACCGACAgGGCCc- -3' miRNA: 3'- -UUCCGGugcc--AGUGGCUGUgCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 115051 | 0.66 | 0.7007 |
Target: 5'- cGGGCgGCGGgcggcagCGCCGuccagucCACGGCCu- -3' miRNA: 3'- uUCCGgUGCCa------GUGGCu------GUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 133996 | 0.67 | 0.690924 |
Target: 5'- aGAGGU--CGGUCGCCGggugcgagcgcuGCACGGUCGGg -3' miRNA: 3'- -UUCCGguGCCAGUGGC------------UGUGCCGGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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