Results 121 - 140 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 3' | -60.6 | NC_002794.1 | + | 35654 | 0.67 | 0.651436 |
Target: 5'- cGGGcGCC-CGGUCuCCGACGUGGUCAAc -3' miRNA: 3'- -UUC-CGGuGCCAGuGGCUGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 37754 | 0.68 | 0.631574 |
Target: 5'- cGGcGCgGCGG-CGCCGGCgggaGCGGCCGu -3' miRNA: 3'- uUC-CGgUGCCaGUGGCUG----UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 94017 | 0.67 | 0.681101 |
Target: 5'- cGGGCCgGCGGguucCGCCGGCG-GGCCc- -3' miRNA: 3'- uUCCGG-UGCCa---GUGGCUGUgCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 78681 | 0.67 | 0.681101 |
Target: 5'- -cGGCCGcCGGcCgcaugugcgGCCGACACGGCg-- -3' miRNA: 3'- uuCCGGU-GCCaG---------UGGCUGUGCCGguu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 145468 | 0.67 | 0.681101 |
Target: 5'- -uGGa-GCGGUCGCCGAa--GGCCGAg -3' miRNA: 3'- uuCCggUGCCAGUGGCUgugCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 141036 | 0.66 | 0.7007 |
Target: 5'- cGAGGCCccgACGGUC-CUGACGuuuuUGGCCc- -3' miRNA: 3'- -UUCCGG---UGCCAGuGGCUGU----GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 180007 | 0.66 | 0.7007 |
Target: 5'- cGGGCC-CGGcCA-CGACgACGGCCGc -3' miRNA: 3'- uUCCGGuGCCaGUgGCUG-UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 60119 | 0.66 | 0.7007 |
Target: 5'- cGAGGUCAUccucaCGCCGGuCACGGCCGAc -3' miRNA: 3'- -UUCCGGUGcca--GUGGCU-GUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 134206 | 0.66 | 0.7007 |
Target: 5'- gGGGGCCGuCGGUCGCCaa-GCGaccGCCGAu -3' miRNA: 3'- -UUCCGGU-GCCAGUGGcugUGC---CGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 47945 | 0.66 | 0.7007 |
Target: 5'- cGGcGCCGCGcGUC-CCGGCGcCGGCUGGg -3' miRNA: 3'- uUC-CGGUGC-CAGuGGCUGU-GCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 5055 | 0.66 | 0.7007 |
Target: 5'- uGGGGCCuuugacUCACCGACAgGGCCc- -3' miRNA: 3'- -UUCCGGugcc--AGUGGCUGUgCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 115051 | 0.66 | 0.7007 |
Target: 5'- cGGGCgGCGGgcggcagCGCCGuccagucCACGGCCu- -3' miRNA: 3'- uUCCGgUGCCa------GUGGCu------GUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 133996 | 0.67 | 0.690924 |
Target: 5'- aGAGGU--CGGUCGCCGggugcgagcgcuGCACGGUCGGg -3' miRNA: 3'- -UUCCGguGCCAGUGGC------------UGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 194110 | 0.66 | 0.7007 |
Target: 5'- -cGuGCUGCGG-CACCGcgcGCACGGCUGAg -3' miRNA: 3'- uuC-CGGUGCCaGUGGC---UGUGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 104490 | 0.67 | 0.690924 |
Target: 5'- -cGGCCACGGcgGCCGGguCGGgCGAg -3' miRNA: 3'- uuCCGGUGCCagUGGCUguGCCgGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 14921 | 0.67 | 0.690924 |
Target: 5'- cGGGCuCGCGGUC-CCGACGugcucucgauCGGCUc- -3' miRNA: 3'- uUCCG-GUGCCAGuGGCUGU----------GCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 179783 | 0.67 | 0.690924 |
Target: 5'- uAGcGCC-CGGUCACCGucgucagguuccACACGGUCu- -3' miRNA: 3'- uUC-CGGuGCCAGUGGC------------UGUGCCGGuu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 189665 | 0.67 | 0.681101 |
Target: 5'- -uGGCCgaGCGGUCGCCc---CGGCCGGg -3' miRNA: 3'- uuCCGG--UGCCAGUGGcuguGCCGGUU- -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 151605 | 0.67 | 0.681101 |
Target: 5'- cGGGcCCGCGGUUcCuCGGCugACGGCCGg -3' miRNA: 3'- uUCC-GGUGCCAGuG-GCUG--UGCCGGUu -5' |
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11136 | 3' | -60.6 | NC_002794.1 | + | 376 | 0.67 | 0.681101 |
Target: 5'- -cGGCCGCGcGaUCcCCGGCACGcuGCCAc -3' miRNA: 3'- uuCCGGUGC-C-AGuGGCUGUGC--CGGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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