miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 66643 0.66 0.84081
Target:  5'- aGGUCCGuCCGGGggcaucgguaacggCGUCGuggucaACGGCCccGGc -3'
miRNA:   3'- -UCAGGC-GGUCCa-------------GCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 137464 0.66 0.837724
Target:  5'- -aUCCGCCG---UGUCGGCGGCCu-- -3'
miRNA:   3'- ucAGGCGGUccaGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 133998 0.66 0.837724
Target:  5'- aGGUCgguCGCCGGGUgCGagCGcugcACGGUCGGGu -3'
miRNA:   3'- -UCAG---GCGGUCCA-GCa-GC----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 104791 0.66 0.837724
Target:  5'- --gCCGaCAGGcggugcugcuUCG-CGAUGGCCAGGu -3'
miRNA:   3'- ucaGGCgGUCC----------AGCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 86989 0.66 0.837724
Target:  5'- aGGUCCGgCGGcUU-UCGGCGGCguGGg -3'
miRNA:   3'- -UCAGGCgGUCcAGcAGCUGCCGguCC- -5'
11136 5' -60.2 NC_002794.1 + 43964 0.66 0.837724
Target:  5'- uGGUCCGuCCAgaugagcuGGUCGUUGGa-GCCGGa -3'
miRNA:   3'- -UCAGGC-GGU--------CCAGCAGCUgcCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 184574 0.66 0.837724
Target:  5'- --gCCGCCGcGG-CGgCGGCGGCCAc- -3'
miRNA:   3'- ucaGGCGGU-CCaGCaGCUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 32246 0.66 0.829894
Target:  5'- aGGUCCuGCagcugcuGG-CGcUCGACGGCCGGc -3'
miRNA:   3'- -UCAGG-CGgu-----CCaGC-AGCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 87025 0.66 0.829894
Target:  5'- gGGUCCGCaggaucCGGGgacCGgcgCGGCucggGGCCGGGu -3'
miRNA:   3'- -UCAGGCG------GUCCa--GCa--GCUG----CCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 55345 0.66 0.829894
Target:  5'- gGGUCgCGCCcgAGG-CGgccgaGGCGGCCgAGGc -3'
miRNA:   3'- -UCAG-GCGG--UCCaGCag---CUGCCGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 70327 0.66 0.829894
Target:  5'- cGcCCGCgAaGaCGcCGACGGCCGGGc -3'
miRNA:   3'- uCaGGCGgUcCaGCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 101610 0.66 0.829103
Target:  5'- cGGcCCGCCGGGcgggggugccguuUCGUCcgcgagcgugGGCGGgCGGGc -3'
miRNA:   3'- -UCaGGCGGUCC-------------AGCAG----------CUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 192907 0.66 0.817037
Target:  5'- cGUCCGCgAacGGUCG-CGAguccaucgagaugaaCGGCCAGc -3'
miRNA:   3'- uCAGGCGgU--CCAGCaGCU---------------GCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 49391 0.66 0.813761
Target:  5'- cAGgCCGCCGccGUCGgccaCGGCGGCCGcGGc -3'
miRNA:   3'- -UCaGGCGGUc-CAGCa---GCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 105710 0.66 0.813761
Target:  5'- -cUCCGCUcgAGGcgaUCG-CGGCGGCCgucGGGa -3'
miRNA:   3'- ucAGGCGG--UCC---AGCaGCUGCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 186274 0.66 0.805471
Target:  5'- --aCCGCCuGGcgCGgCGgcaccGCGGCCAGGc -3'
miRNA:   3'- ucaGGCGGuCCa-GCaGC-----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 30070 0.66 0.805471
Target:  5'- gGGUCCggucGCCcGGUCGaCGaggcgcGCGGCCGGu -3'
miRNA:   3'- -UCAGG----CGGuCCAGCaGC------UGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 4176 0.66 0.805471
Target:  5'- cGUCgCGgUGGGUCGUCGA-GGCaAGGc -3'
miRNA:   3'- uCAG-GCgGUCCAGCAGCUgCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 104390 0.66 0.805471
Target:  5'- uAGUaCGUCAGGUgGUCGuccgccGCGGCCucGGc -3'
miRNA:   3'- -UCAgGCGGUCCAgCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 124238 0.66 0.802956
Target:  5'- aAGUgCGCCuguuccccgcgcgcGGGUaGUCGcCGGCCAGc -3'
miRNA:   3'- -UCAgGCGG--------------UCCAgCAGCuGCCGGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.