Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 11904 | 0.69 | 0.639623 |
Target: 5'- cGUgcUCGCCGGGUuccUGaCGACGGCCAcGGu -3' miRNA: 3'- uCA--GGCGGUCCA---GCaGCUGCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 83862 | 0.69 | 0.629965 |
Target: 5'- aAG-CCGUCGucccGGUCGgcgCGACGGCCccGGGc -3' miRNA: 3'- -UCaGGCGGU----CCAGCa--GCUGCCGG--UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 190348 | 0.69 | 0.678132 |
Target: 5'- -cUgCGUCAGGUCGUCGgccgcGCGGCgCAGcGg -3' miRNA: 3'- ucAgGCGGUCCAGCAGC-----UGCCG-GUC-C- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 107277 | 0.69 | 0.678132 |
Target: 5'- cGUCCGCCGccgucgccccGUCGUCGACGcuccucGCgGGGg -3' miRNA: 3'- uCAGGCGGUc---------CAGCAGCUGC------CGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 118261 | 0.69 | 0.674298 |
Target: 5'- aGGUCgGCCGGGgcggcggcgccggCGUCGGggacCGcGCCGGGc -3' miRNA: 3'- -UCAGgCGGUCCa------------GCAGCU----GC-CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 112308 | 0.69 | 0.668537 |
Target: 5'- gGGUCCGaCUucGG-CGcCGACGGCgGGGa -3' miRNA: 3'- -UCAGGC-GGu-CCaGCaGCUGCCGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 188156 | 0.69 | 0.658916 |
Target: 5'- aGGUCgGCCGGGUCG--GACaGGUCGGa -3' miRNA: 3'- -UCAGgCGGUCCAGCagCUG-CCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 77671 | 0.7 | 0.581825 |
Target: 5'- gGGUCUGCgGGGUCaUCGuCGGCCu-- -3' miRNA: 3'- -UCAGGCGgUCCAGcAGCuGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 156522 | 0.7 | 0.591412 |
Target: 5'- gAGUCCGCggugaGGGUucCGUCGcguCGGCCGuGGa -3' miRNA: 3'- -UCAGGCGg----UCCA--GCAGCu--GCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 29204 | 0.7 | 0.591412 |
Target: 5'- cGUCCGUCcGG-CgGUCGGCGGCCGucGGc -3' miRNA: 3'- uCAGGCGGuCCaG-CAGCUGCCGGU--CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 106726 | 0.7 | 0.595255 |
Target: 5'- gGGUCCGagaguucaacgugcuCCGGGucaacgaguccaUCGUCGugGGCCucaAGGa -3' miRNA: 3'- -UCAGGC---------------GGUCC------------AGCAGCugCCGG---UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 86832 | 0.7 | 0.601026 |
Target: 5'- --cUCGCCGGGaUCGggUCGGCGGCCccgccGGGa -3' miRNA: 3'- ucaGGCGGUCC-AGC--AGCUGCCGG-----UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 37133 | 0.7 | 0.61066 |
Target: 5'- cAGcUCCGCCGGGUCGagGGCGcagcuCCAGu -3' miRNA: 3'- -UC-AGGCGGUCCAGCagCUGCc----GGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 124378 | 0.7 | 0.607768 |
Target: 5'- cGUUCGCCucGGUCG-CGGCGGCgcgucgccggucguCGGGg -3' miRNA: 3'- uCAGGCGGu-CCAGCaGCUGCCG--------------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 107070 | 0.7 | 0.601026 |
Target: 5'- cGGcgCCGCCGGcauGUCGgagcCGACGGgCGGGg -3' miRNA: 3'- -UCa-GGCGGUC---CAGCa---GCUGCCgGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 12917 | 0.71 | 0.53448 |
Target: 5'- gAGUaCCGCCuGGcCGUCGACGaCCuGGc -3' miRNA: 3'- -UCA-GGCGGuCCaGCAGCUGCcGGuCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 182940 | 0.71 | 0.543853 |
Target: 5'- uAGUCCggcGCCGGGcUCGagccgaCGGCGGCCGGc -3' miRNA: 3'- -UCAGG---CGGUCC-AGCa-----GCUGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 192614 | 0.71 | 0.543853 |
Target: 5'- -cUCCGCCAGGUgcggacaGUCgGGCGGCCGc- -3' miRNA: 3'- ucAGGCGGUCCAg------CAG-CUGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 113525 | 0.71 | 0.553279 |
Target: 5'- gAGcUCCGCCGGcucggCGUCGcCGGCCcGGa -3' miRNA: 3'- -UC-AGGCGGUCca---GCAGCuGCCGGuCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 80446 | 0.71 | 0.525165 |
Target: 5'- cGG-CCGCCGGccCGUCGGCGGCCc-- -3' miRNA: 3'- -UCaGGCGGUCcaGCAGCUGCCGGucc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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