miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 106342 0.84 0.093935
Target:  5'- cGGUUCGCCGGGUCGaCGGCGGgCGGGc -3'
miRNA:   3'- -UCAGGCGGUCCAGCaGCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 116124 0.84 0.09631
Target:  5'- gAGUCCGCCGcGGcggCGgcggCGGCGGCCAGGg -3'
miRNA:   3'- -UCAGGCGGU-CCa--GCa---GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 48849 0.78 0.222118
Target:  5'- gAGaUCCGgCAGGgcgcgauagucccCGUCGGCGGCCAGGu -3'
miRNA:   3'- -UC-AGGCgGUCCa------------GCAGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 119498 0.77 0.24568
Target:  5'- cGUCCuCgGGGUCGUCGGCGGCgCGGa -3'
miRNA:   3'- uCAGGcGgUCCAGCAGCUGCCG-GUCc -5'
11136 5' -60.2 NC_002794.1 + 139441 0.76 0.293139
Target:  5'- uGUCCGCgcgcgccgaucggCAGGUCGUCG-UGcGCCAGGa -3'
miRNA:   3'- uCAGGCG-------------GUCCAGCAGCuGC-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 192726 0.76 0.293784
Target:  5'- --aUCGCCAGGUCGUCGGCcaGCCGGu -3'
miRNA:   3'- ucaGGCGGUCCAGCAGCUGc-CGGUCc -5'
11136 5' -60.2 NC_002794.1 + 47737 0.76 0.31363
Target:  5'- cAGcCCGCCGGGUCcacgUGGCGGCCGuGGu -3'
miRNA:   3'- -UCaGGCGGUCCAGca--GCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 70894 0.76 0.31363
Target:  5'- cGagCGCCAGGUCGgugagcaCGuCGGCCAGGc -3'
miRNA:   3'- uCagGCGGUCCAGCa------GCuGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 95824 0.75 0.334474
Target:  5'- cGG-CgGCCGGGggagCGgcggCGGCGGCCGGGg -3'
miRNA:   3'- -UCaGgCGGUCCa---GCa---GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 190009 0.75 0.341644
Target:  5'- cGGcCCGuCCGGGUCcaUCGGCGGCCGGu -3'
miRNA:   3'- -UCaGGC-GGUCCAGc-AGCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 32927 0.74 0.371422
Target:  5'- aGGUCgGCgGGaagCGcUCGGCGGCCAGGg -3'
miRNA:   3'- -UCAGgCGgUCca-GC-AGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 135598 0.74 0.394889
Target:  5'- gGGUCCGUCGGGUCGgaagCGGauCGGUcgCAGGu -3'
miRNA:   3'- -UCAGGCGGUCCAGCa---GCU--GCCG--GUCC- -5'
11136 5' -60.2 NC_002794.1 + 189004 0.74 0.402922
Target:  5'- cAGcUCU-CCAGGUCG-CGACaGGCCAGGa -3'
miRNA:   3'- -UC-AGGcGGUCCAGCaGCUG-CCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 71083 0.73 0.419293
Target:  5'- gGGUCCagacgaacaGCC-GGUCGcCGGCGGCCuGGc -3'
miRNA:   3'- -UCAGG---------CGGuCCAGCaGCUGCCGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 87319 0.73 0.453211
Target:  5'- cGGUCC-CCAGGUCcagCGGCGG-CAGGu -3'
miRNA:   3'- -UCAGGcGGUCCAGca-GCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 114756 0.72 0.461922
Target:  5'- cGcCCGCCGgcgccGGUCcUCGGCGGCgAGGa -3'
miRNA:   3'- uCaGGCGGU-----CCAGcAGCUGCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 143025 0.72 0.488567
Target:  5'- cGGUCgGCCGGGUCGaCGugcaggGCcGCCAGGu -3'
miRNA:   3'- -UCAGgCGGUCCAGCaGC------UGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 49036 0.72 0.497609
Target:  5'- cGUCCGgCGcGGUCGUCaGCGuCCAGGg -3'
miRNA:   3'- uCAGGCgGU-CCAGCAGcUGCcGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 80446 0.71 0.525165
Target:  5'- cGG-CCGCCGGccCGUCGGCGGCCc-- -3'
miRNA:   3'- -UCaGGCGGUCcaGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 109512 0.71 0.533546
Target:  5'- uGGUCCGCCcGGcccgcgcUCGuUCGGCgucgGGCCGGGc -3'
miRNA:   3'- -UCAGGCGGuCC-------AGC-AGCUG----CCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.