miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 12917 0.71 0.53448
Target:  5'- gAGUaCCGCCuGGcCGUCGACGaCCuGGc -3'
miRNA:   3'- -UCA-GGCGGuCCaGCAGCUGCcGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 182940 0.71 0.543853
Target:  5'- uAGUCCggcGCCGGGcUCGagccgaCGGCGGCCGGc -3'
miRNA:   3'- -UCAGG---CGGUCC-AGCa-----GCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 192614 0.71 0.543853
Target:  5'- -cUCCGCCAGGUgcggacaGUCgGGCGGCCGc- -3'
miRNA:   3'- ucAGGCGGUCCAg------CAG-CUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 179103 0.71 0.553279
Target:  5'- --aCCGUCcGGUCGUCcGCGGuCCGGGc -3'
miRNA:   3'- ucaGGCGGuCCAGCAGcUGCC-GGUCC- -5'
11136 5' -60.2 NC_002794.1 + 113525 0.71 0.553279
Target:  5'- gAGcUCCGCCGGcucggCGUCGcCGGCCcGGa -3'
miRNA:   3'- -UC-AGGCGGUCca---GCAGCuGCCGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 77671 0.7 0.581825
Target:  5'- gGGUCUGCgGGGUCaUCGuCGGCCu-- -3'
miRNA:   3'- -UCAGGCGgUCCAGcAGCuGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 29204 0.7 0.591412
Target:  5'- cGUCCGUCcGG-CgGUCGGCGGCCGucGGc -3'
miRNA:   3'- uCAGGCGGuCCaG-CAGCUGCCGGU--CC- -5'
11136 5' -60.2 NC_002794.1 + 156522 0.7 0.591412
Target:  5'- gAGUCCGCggugaGGGUucCGUCGcguCGGCCGuGGa -3'
miRNA:   3'- -UCAGGCGg----UCCA--GCAGCu--GCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 106726 0.7 0.595255
Target:  5'- gGGUCCGagaguucaacgugcuCCGGGucaacgaguccaUCGUCGugGGCCucaAGGa -3'
miRNA:   3'- -UCAGGC---------------GGUCC------------AGCAGCugCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 86832 0.7 0.601026
Target:  5'- --cUCGCCGGGaUCGggUCGGCGGCCccgccGGGa -3'
miRNA:   3'- ucaGGCGGUCC-AGC--AGCUGCCGG-----UCC- -5'
11136 5' -60.2 NC_002794.1 + 107070 0.7 0.601026
Target:  5'- cGGcgCCGCCGGcauGUCGgagcCGACGGgCGGGg -3'
miRNA:   3'- -UCa-GGCGGUC---CAGCa---GCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 124378 0.7 0.607768
Target:  5'- cGUUCGCCucGGUCG-CGGCGGCgcgucgccggucguCGGGg -3'
miRNA:   3'- uCAGGCGGu-CCAGCaGCUGCCG--------------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 37133 0.7 0.61066
Target:  5'- cAGcUCCGCCGGGUCGagGGCGcagcuCCAGu -3'
miRNA:   3'- -UC-AGGCGGUCCAGCagCUGCc----GGUCc -5'
11136 5' -60.2 NC_002794.1 + 76605 0.69 0.627067
Target:  5'- --cCCGCCGGGUCGUCgucaguagcccuuaGACguGGCCGuGGc -3'
miRNA:   3'- ucaGGCGGUCCAGCAG--------------CUG--CCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 11292 0.69 0.629965
Target:  5'- cGUCCgcaacaccaGCCAGGUCuUCG-UGGCCAGc -3'
miRNA:   3'- uCAGG---------CGGUCCAGcAGCuGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 83862 0.69 0.629965
Target:  5'- aAG-CCGUCGucccGGUCGgcgCGACGGCCccGGGc -3'
miRNA:   3'- -UCaGGCGGU----CCAGCa--GCUGCCGG--UCC- -5'
11136 5' -60.2 NC_002794.1 + 140674 0.69 0.629965
Target:  5'- gGGUCgGgCgCAGGUCGgugCGACGGaCCGGc -3'
miRNA:   3'- -UCAGgC-G-GUCCAGCa--GCUGCC-GGUCc -5'
11136 5' -60.2 NC_002794.1 + 11904 0.69 0.639623
Target:  5'- cGUgcUCGCCGGGUuccUGaCGACGGCCAcGGu -3'
miRNA:   3'- uCA--GGCGGUCCA---GCaGCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 147017 0.69 0.64831
Target:  5'- cGG-CCGCCGgcgcucGGUcuaaggacgaagcCGUCGGCGGCCGGu -3'
miRNA:   3'- -UCaGGCGGU------CCA-------------GCAGCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 594 0.69 0.657952
Target:  5'- cGGUCCguucgugGCCGGGUgCGgucaGGCGGCCcGGu -3'
miRNA:   3'- -UCAGG-------CGGUCCA-GCag--CUGCCGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.