Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 188156 | 0.69 | 0.658916 |
Target: 5'- aGGUCgGCCGGGUCG--GACaGGUCGGa -3' miRNA: 3'- -UCAGgCGGUCCAGCagCUG-CCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 112308 | 0.69 | 0.668537 |
Target: 5'- gGGUCCGaCUucGG-CGcCGACGGCgGGGa -3' miRNA: 3'- -UCAGGC-GGu-CCaGCaGCUGCCGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 118261 | 0.69 | 0.674298 |
Target: 5'- aGGUCgGCCGGGgcggcggcgccggCGUCGGggacCGcGCCGGGc -3' miRNA: 3'- -UCAGgCGGUCCa------------GCAGCU----GC-CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 190348 | 0.69 | 0.678132 |
Target: 5'- -cUgCGUCAGGUCGUCGgccgcGCGGCgCAGcGg -3' miRNA: 3'- ucAgGCGGUCCAGCAGC-----UGCCG-GUC-C- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 107277 | 0.69 | 0.678132 |
Target: 5'- cGUCCGCCGccgucgccccGUCGUCGACGcuccucGCgGGGg -3' miRNA: 3'- uCAGGCGGUc---------CAGCAGCUGC------CGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 12164 | 0.68 | 0.684829 |
Target: 5'- --aUCGCCcGGaUCGUCGccgccgacgccgccGCGGCCGGGc -3' miRNA: 3'- ucaGGCGGuCC-AGCAGC--------------UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 50758 | 0.68 | 0.687694 |
Target: 5'- cGUCCGCCccGGG-CGgcggCGACGGCgcgucuCGGGc -3' miRNA: 3'- uCAGGCGG--UCCaGCa---GCUGCCG------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 129924 | 0.68 | 0.687694 |
Target: 5'- -aUUCGCCAGGcCGUggCGACGGCgGcGGc -3' miRNA: 3'- ucAGGCGGUCCaGCA--GCUGCCGgU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 116944 | 0.68 | 0.687694 |
Target: 5'- cGUCC-CCGGcGgcggCGUCGGCGGgCgCAGGa -3' miRNA: 3'- uCAGGcGGUC-Ca---GCAGCUGCC-G-GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 99455 | 0.68 | 0.697214 |
Target: 5'- --gCCGCCGGGgguaUCGGCGGCuCAGa -3' miRNA: 3'- ucaGGCGGUCCagc-AGCUGCCG-GUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 182210 | 0.68 | 0.697214 |
Target: 5'- cGUCgCGCCAcGGggcucCGACGGUCAGGc -3' miRNA: 3'- uCAG-GCGGU-CCagca-GCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 72547 | 0.68 | 0.716102 |
Target: 5'- ---gCGCguGGUCG-CGcaacGCGGCCGGGa -3' miRNA: 3'- ucagGCGguCCAGCaGC----UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 115317 | 0.68 | 0.716102 |
Target: 5'- cGUCCGCaC-GGUCGccgCGGCGuCCGGGc -3' miRNA: 3'- uCAGGCG-GuCCAGCa--GCUGCcGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 138390 | 0.68 | 0.725454 |
Target: 5'- gGG-CUGCCagaaggcgucgAGGUCGUCGcCGGCCGc- -3' miRNA: 3'- -UCaGGCGG-----------UCCAGCAGCuGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 44451 | 0.68 | 0.725454 |
Target: 5'- cGcCCGCCcGGaCGUCGGCGGCgGa- -3' miRNA: 3'- uCaGGCGGuCCaGCAGCUGCCGgUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 90594 | 0.68 | 0.725454 |
Target: 5'- cAGUcCCGUCGGGcC-UCGACGGUCGcGGu -3' miRNA: 3'- -UCA-GGCGGUCCaGcAGCUGCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119756 | 0.68 | 0.725454 |
Target: 5'- cAGcUCCGgaCCAGGUCG-CGGcCGGCCuccAGGc -3' miRNA: 3'- -UC-AGGC--GGUCCAGCaGCU-GCCGG---UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 31375 | 0.68 | 0.725454 |
Target: 5'- cGUCCuCCuccccGUCGUCGGCGGCCc-- -3' miRNA: 3'- uCAGGcGGuc---CAGCAGCUGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 188352 | 0.68 | 0.734734 |
Target: 5'- cGUCgCGCCcguccGGcCGgCGGCGGCCgAGGg -3' miRNA: 3'- uCAG-GCGGu----CCaGCaGCUGCCGG-UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 43008 | 0.68 | 0.738424 |
Target: 5'- cGGUCCGaguagcuccgCAGGUCGUCGGCcuccaucgcgcggcaGGCCGa- -3' miRNA: 3'- -UCAGGCg---------GUCCAGCAGCUG---------------CCGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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