Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 195037 | 0.67 | 0.743935 |
Target: 5'- --gCCGCCAGGugcaucgucgUCGUCGACaGGUCGa- -3' miRNA: 3'- ucaGGCGGUCC----------AGCAGCUG-CCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 114335 | 0.67 | 0.753049 |
Target: 5'- uAGUcCCGCCGcagcGGcUCGUCcGCcGCCAGGg -3' miRNA: 3'- -UCA-GGCGGU----CC-AGCAGcUGcCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 111633 | 0.67 | 0.753049 |
Target: 5'- cGG-CCGCCGccGGUCGggCGccGCGGCCGcGGc -3' miRNA: 3'- -UCaGGCGGU--CCAGCa-GC--UGCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 34070 | 0.67 | 0.753049 |
Target: 5'- --cCCGCCGuuccCGcCGGCGGCCGGGc -3' miRNA: 3'- ucaGGCGGUcca-GCaGCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 146029 | 0.67 | 0.753049 |
Target: 5'- cAGUCCGCUcgaucuccGGGaccCGUCGACGaCCgAGGa -3' miRNA: 3'- -UCAGGCGG--------UCCa--GCAGCUGCcGG-UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 71347 | 0.67 | 0.753049 |
Target: 5'- cGUCCGCCAGG-CGgCGcagcagguGCGGCagccgcccCAGGa -3' miRNA: 3'- uCAGGCGGUCCaGCaGC--------UGCCG--------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 44293 | 0.67 | 0.753049 |
Target: 5'- cGcCCGCCGGGcCGgCGA-GGCgGGGa -3' miRNA: 3'- uCaGGCGGUCCaGCaGCUgCCGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 76317 | 0.67 | 0.753049 |
Target: 5'- ---gCGCCGGcaaccaGUCGUccucccuccCGGCGGCCGGGa -3' miRNA: 3'- ucagGCGGUC------CAGCA---------GCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 27611 | 0.67 | 0.762067 |
Target: 5'- cGUCCaCCcGGUCG--GACGGCCGGu -3' miRNA: 3'- uCAGGcGGuCCAGCagCUGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 62682 | 0.67 | 0.770097 |
Target: 5'- --aCCGCCugcGGGUgcagcugUGUCGGCGGCCGc- -3' miRNA: 3'- ucaGGCGG---UCCA-------GCAGCUGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 187451 | 0.67 | 0.770097 |
Target: 5'- cGUCUGCCgccgcucGGcGUCGcUCGGCGcgcGCCGGGc -3' miRNA: 3'- uCAGGCGG-------UC-CAGC-AGCUGC---CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 57997 | 0.67 | 0.770984 |
Target: 5'- ---gCGCCAGGccuUCGUCG-CcGCCGGGg -3' miRNA: 3'- ucagGCGGUCC---AGCAGCuGcCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119542 | 0.67 | 0.770984 |
Target: 5'- cGUCCGC--GGcCGUCGcCGGCCAc- -3' miRNA: 3'- uCAGGCGguCCaGCAGCuGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 113685 | 0.67 | 0.770984 |
Target: 5'- aGGcCCGCCAc--CGUCGGCaGcGCCAGGu -3' miRNA: 3'- -UCaGGCGGUccaGCAGCUG-C-CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119795 | 0.67 | 0.77979 |
Target: 5'- cGGUCCGCCgacuugAGcGUCG-CG-UGGCuCAGGa -3' miRNA: 3'- -UCAGGCGG------UC-CAGCaGCuGCCG-GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 180917 | 0.67 | 0.77979 |
Target: 5'- cGGUCuCGCCGGcGcCGUCGGaGGUCGGu -3' miRNA: 3'- -UCAG-GCGGUC-CaGCAGCUgCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 95754 | 0.67 | 0.77979 |
Target: 5'- uGGUacUCGCgGGGcggCGgccgcgaCGGCGGCCGGGg -3' miRNA: 3'- -UCA--GGCGgUCCa--GCa------GCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 148139 | 0.67 | 0.77979 |
Target: 5'- gGGgCCGCCGGGgCGagGGCGGUCGcgacGGa -3' miRNA: 3'- -UCaGGCGGUCCaGCagCUGCCGGU----CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 66533 | 0.67 | 0.788478 |
Target: 5'- gGGUCCGCgaAGGUCGgcgcCGGCGGaUAGu -3' miRNA: 3'- -UCAGGCGg-UCCAGCa---GCUGCCgGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 151719 | 0.66 | 0.797041 |
Target: 5'- cAGUCgCGCgaAGGaCGUCGuCGGCCGccGGu -3' miRNA: 3'- -UCAG-GCGg-UCCaGCAGCuGCCGGU--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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