Results 81 - 100 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 124238 | 0.66 | 0.802956 |
Target: 5'- aAGUgCGCCuguuccccgcgcgcGGGUaGUCGcCGGCCAGc -3' miRNA: 3'- -UCAgGCGG--------------UCCAgCAGCuGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 186274 | 0.66 | 0.805471 |
Target: 5'- --aCCGCCuGGcgCGgCGgcaccGCGGCCAGGc -3' miRNA: 3'- ucaGGCGGuCCa-GCaGC-----UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 30070 | 0.66 | 0.805471 |
Target: 5'- gGGUCCggucGCCcGGUCGaCGaggcgcGCGGCCGGu -3' miRNA: 3'- -UCAGG----CGGuCCAGCaGC------UGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 104390 | 0.66 | 0.805471 |
Target: 5'- uAGUaCGUCAGGUgGUCGuccgccGCGGCCucGGc -3' miRNA: 3'- -UCAgGCGGUCCAgCAGC------UGCCGGu-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 4176 | 0.66 | 0.805471 |
Target: 5'- cGUCgCGgUGGGUCGUCGA-GGCaAGGc -3' miRNA: 3'- uCAG-GCgGUCCAGCAGCUgCCGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 49391 | 0.66 | 0.813761 |
Target: 5'- cAGgCCGCCGccGUCGgccaCGGCGGCCGcGGc -3' miRNA: 3'- -UCaGGCGGUc-CAGCa---GCUGCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 105710 | 0.66 | 0.813761 |
Target: 5'- -cUCCGCUcgAGGcgaUCG-CGGCGGCCgucGGGa -3' miRNA: 3'- ucAGGCGG--UCC---AGCaGCUGCCGG---UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 192907 | 0.66 | 0.817037 |
Target: 5'- cGUCCGCgAacGGUCG-CGAguccaucgagaugaaCGGCCAGc -3' miRNA: 3'- uCAGGCGgU--CCAGCaGCU---------------GCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 101610 | 0.66 | 0.829103 |
Target: 5'- cGGcCCGCCGGGcgggggugccguuUCGUCcgcgagcgugGGCGGgCGGGc -3' miRNA: 3'- -UCaGGCGGUCC-------------AGCAG----------CUGCCgGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 55345 | 0.66 | 0.829894 |
Target: 5'- gGGUCgCGCCcgAGG-CGgccgaGGCGGCCgAGGc -3' miRNA: 3'- -UCAG-GCGG--UCCaGCag---CUGCCGG-UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 70327 | 0.66 | 0.829894 |
Target: 5'- cGcCCGCgAaGaCGcCGACGGCCGGGc -3' miRNA: 3'- uCaGGCGgUcCaGCaGCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 87025 | 0.66 | 0.829894 |
Target: 5'- gGGUCCGCaggaucCGGGgacCGgcgCGGCucggGGCCGGGu -3' miRNA: 3'- -UCAGGCG------GUCCa--GCa--GCUG----CCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 32246 | 0.66 | 0.829894 |
Target: 5'- aGGUCCuGCagcugcuGG-CGcUCGACGGCCGGc -3' miRNA: 3'- -UCAGG-CGgu-----CCaGC-AGCUGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 133998 | 0.66 | 0.837724 |
Target: 5'- aGGUCgguCGCCGGGUgCGagCGcugcACGGUCGGGu -3' miRNA: 3'- -UCAG---GCGGUCCA-GCa-GC----UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 104791 | 0.66 | 0.837724 |
Target: 5'- --gCCGaCAGGcggugcugcuUCG-CGAUGGCCAGGu -3' miRNA: 3'- ucaGGCgGUCC----------AGCaGCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 86989 | 0.66 | 0.837724 |
Target: 5'- aGGUCCGgCGGcUU-UCGGCGGCguGGg -3' miRNA: 3'- -UCAGGCgGUCcAGcAGCUGCCGguCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 43964 | 0.66 | 0.837724 |
Target: 5'- uGGUCCGuCCAgaugagcuGGUCGUUGGa-GCCGGa -3' miRNA: 3'- -UCAGGC-GGU--------CCAGCAGCUgcCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 137464 | 0.66 | 0.837724 |
Target: 5'- -aUCCGCCG---UGUCGGCGGCCu-- -3' miRNA: 3'- ucAGGCGGUccaGCAGCUGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 184574 | 0.66 | 0.837724 |
Target: 5'- --gCCGCCGcGG-CGgCGGCGGCCAc- -3' miRNA: 3'- ucaGGCGGU-CCaGCaGCUGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 66643 | 0.66 | 0.84081 |
Target: 5'- aGGUCCGuCCGGGggcaucgguaacggCGUCGuggucaACGGCCccGGc -3' miRNA: 3'- -UCAGGC-GGUCCa-------------GCAGC------UGCCGGu-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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