miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 151719 0.66 0.797041
Target:  5'- cAGUCgCGCgaAGGaCGUCGuCGGCCGccGGu -3'
miRNA:   3'- -UCAG-GCGg-UCCaGCAGCuGCCGGU--CC- -5'
11136 5' -60.2 NC_002794.1 + 66533 0.67 0.788478
Target:  5'- gGGUCCGCgaAGGUCGgcgcCGGCGGaUAGu -3'
miRNA:   3'- -UCAGGCGg-UCCAGCa---GCUGCCgGUCc -5'
11136 5' -60.2 NC_002794.1 + 95754 0.67 0.77979
Target:  5'- uGGUacUCGCgGGGcggCGgccgcgaCGGCGGCCGGGg -3'
miRNA:   3'- -UCA--GGCGgUCCa--GCa------GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 148139 0.67 0.77979
Target:  5'- gGGgCCGCCGGGgCGagGGCGGUCGcgacGGa -3'
miRNA:   3'- -UCaGGCGGUCCaGCagCUGCCGGU----CC- -5'
11136 5' -60.2 NC_002794.1 + 180917 0.67 0.77979
Target:  5'- cGGUCuCGCCGGcGcCGUCGGaGGUCGGu -3'
miRNA:   3'- -UCAG-GCGGUC-CaGCAGCUgCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 119795 0.67 0.77979
Target:  5'- cGGUCCGCCgacuugAGcGUCG-CG-UGGCuCAGGa -3'
miRNA:   3'- -UCAGGCGG------UC-CAGCaGCuGCCG-GUCC- -5'
11136 5' -60.2 NC_002794.1 + 113685 0.67 0.770984
Target:  5'- aGGcCCGCCAc--CGUCGGCaGcGCCAGGu -3'
miRNA:   3'- -UCaGGCGGUccaGCAGCUG-C-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 119542 0.67 0.770984
Target:  5'- cGUCCGC--GGcCGUCGcCGGCCAc- -3'
miRNA:   3'- uCAGGCGguCCaGCAGCuGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 57997 0.67 0.770984
Target:  5'- ---gCGCCAGGccuUCGUCG-CcGCCGGGg -3'
miRNA:   3'- ucagGCGGUCC---AGCAGCuGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 62682 0.67 0.770097
Target:  5'- --aCCGCCugcGGGUgcagcugUGUCGGCGGCCGc- -3'
miRNA:   3'- ucaGGCGG---UCCA-------GCAGCUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 187451 0.67 0.770097
Target:  5'- cGUCUGCCgccgcucGGcGUCGcUCGGCGcgcGCCGGGc -3'
miRNA:   3'- uCAGGCGG-------UC-CAGC-AGCUGC---CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 27611 0.67 0.762067
Target:  5'- cGUCCaCCcGGUCG--GACGGCCGGu -3'
miRNA:   3'- uCAGGcGGuCCAGCagCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 76317 0.67 0.753049
Target:  5'- ---gCGCCGGcaaccaGUCGUccucccuccCGGCGGCCGGGa -3'
miRNA:   3'- ucagGCGGUC------CAGCA---------GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 111633 0.67 0.753049
Target:  5'- cGG-CCGCCGccGGUCGggCGccGCGGCCGcGGc -3'
miRNA:   3'- -UCaGGCGGU--CCAGCa-GC--UGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 34070 0.67 0.753049
Target:  5'- --cCCGCCGuuccCGcCGGCGGCCGGGc -3'
miRNA:   3'- ucaGGCGGUcca-GCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 146029 0.67 0.753049
Target:  5'- cAGUCCGCUcgaucuccGGGaccCGUCGACGaCCgAGGa -3'
miRNA:   3'- -UCAGGCGG--------UCCa--GCAGCUGCcGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 71347 0.67 0.753049
Target:  5'- cGUCCGCCAGG-CGgCGcagcagguGCGGCagccgcccCAGGa -3'
miRNA:   3'- uCAGGCGGUCCaGCaGC--------UGCCG--------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 114335 0.67 0.753049
Target:  5'- uAGUcCCGCCGcagcGGcUCGUCcGCcGCCAGGg -3'
miRNA:   3'- -UCA-GGCGGU----CC-AGCAGcUGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 44293 0.67 0.753049
Target:  5'- cGcCCGCCGGGcCGgCGA-GGCgGGGa -3'
miRNA:   3'- uCaGGCGGUCCaGCaGCUgCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 195037 0.67 0.743935
Target:  5'- --gCCGCCAGGugcaucgucgUCGUCGACaGGUCGa- -3'
miRNA:   3'- ucaGGCGGUCC----------AGCAGCUG-CCGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.