miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 43008 0.68 0.738424
Target:  5'- cGGUCCGaguagcuccgCAGGUCGUCGGCcuccaucgcgcggcaGGCCGa- -3'
miRNA:   3'- -UCAGGCg---------GUCCAGCAGCUG---------------CCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 188352 0.68 0.734734
Target:  5'- cGUCgCGCCcguccGGcCGgCGGCGGCCgAGGg -3'
miRNA:   3'- uCAG-GCGGu----CCaGCaGCUGCCGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 31375 0.68 0.725454
Target:  5'- cGUCCuCCuccccGUCGUCGGCGGCCc-- -3'
miRNA:   3'- uCAGGcGGuc---CAGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 119756 0.68 0.725454
Target:  5'- cAGcUCCGgaCCAGGUCG-CGGcCGGCCuccAGGc -3'
miRNA:   3'- -UC-AGGC--GGUCCAGCaGCU-GCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 90594 0.68 0.725454
Target:  5'- cAGUcCCGUCGGGcC-UCGACGGUCGcGGu -3'
miRNA:   3'- -UCA-GGCGGUCCaGcAGCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 44451 0.68 0.725454
Target:  5'- cGcCCGCCcGGaCGUCGGCGGCgGa- -3'
miRNA:   3'- uCaGGCGGuCCaGCAGCUGCCGgUcc -5'
11136 5' -60.2 NC_002794.1 + 138390 0.68 0.725454
Target:  5'- gGG-CUGCCagaaggcgucgAGGUCGUCGcCGGCCGc- -3'
miRNA:   3'- -UCaGGCGG-----------UCCAGCAGCuGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 115317 0.68 0.716102
Target:  5'- cGUCCGCaC-GGUCGccgCGGCGuCCGGGc -3'
miRNA:   3'- uCAGGCG-GuCCAGCa--GCUGCcGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 72547 0.68 0.716102
Target:  5'- ---gCGCguGGUCG-CGcaacGCGGCCGGGa -3'
miRNA:   3'- ucagGCGguCCAGCaGC----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 99455 0.68 0.697214
Target:  5'- --gCCGCCGGGgguaUCGGCGGCuCAGa -3'
miRNA:   3'- ucaGGCGGUCCagc-AGCUGCCG-GUCc -5'
11136 5' -60.2 NC_002794.1 + 182210 0.68 0.697214
Target:  5'- cGUCgCGCCAcGGggcucCGACGGUCAGGc -3'
miRNA:   3'- uCAG-GCGGU-CCagca-GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 50758 0.68 0.687694
Target:  5'- cGUCCGCCccGGG-CGgcggCGACGGCgcgucuCGGGc -3'
miRNA:   3'- uCAGGCGG--UCCaGCa---GCUGCCG------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 129924 0.68 0.687694
Target:  5'- -aUUCGCCAGGcCGUggCGACGGCgGcGGc -3'
miRNA:   3'- ucAGGCGGUCCaGCA--GCUGCCGgU-CC- -5'
11136 5' -60.2 NC_002794.1 + 116944 0.68 0.687694
Target:  5'- cGUCC-CCGGcGgcggCGUCGGCGGgCgCAGGa -3'
miRNA:   3'- uCAGGcGGUC-Ca---GCAGCUGCC-G-GUCC- -5'
11136 5' -60.2 NC_002794.1 + 12164 0.68 0.684829
Target:  5'- --aUCGCCcGGaUCGUCGccgccgacgccgccGCGGCCGGGc -3'
miRNA:   3'- ucaGGCGGuCC-AGCAGC--------------UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 190348 0.69 0.678132
Target:  5'- -cUgCGUCAGGUCGUCGgccgcGCGGCgCAGcGg -3'
miRNA:   3'- ucAgGCGGUCCAGCAGC-----UGCCG-GUC-C- -5'
11136 5' -60.2 NC_002794.1 + 107277 0.69 0.678132
Target:  5'- cGUCCGCCGccgucgccccGUCGUCGACGcuccucGCgGGGg -3'
miRNA:   3'- uCAGGCGGUc---------CAGCAGCUGC------CGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 118261 0.69 0.674298
Target:  5'- aGGUCgGCCGGGgcggcggcgccggCGUCGGggacCGcGCCGGGc -3'
miRNA:   3'- -UCAGgCGGUCCa------------GCAGCU----GC-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 112308 0.69 0.668537
Target:  5'- gGGUCCGaCUucGG-CGcCGACGGCgGGGa -3'
miRNA:   3'- -UCAGGC-GGu-CCaGCaGCUGCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 188156 0.69 0.658916
Target:  5'- aGGUCgGCCGGGUCG--GACaGGUCGGa -3'
miRNA:   3'- -UCAGgCGGUCCAGCagCUG-CCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.