miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 594 0.69 0.657952
Target:  5'- cGGUCCguucgugGCCGGGUgCGgucaGGCGGCCcGGu -3'
miRNA:   3'- -UCAGG-------CGGUCCA-GCag--CUGCCGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 4176 0.66 0.805471
Target:  5'- cGUCgCGgUGGGUCGUCGA-GGCaAGGc -3'
miRNA:   3'- uCAG-GCgGUCCAGCAGCUgCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 11292 0.69 0.629965
Target:  5'- cGUCCgcaacaccaGCCAGGUCuUCG-UGGCCAGc -3'
miRNA:   3'- uCAGG---------CGGUCCAGcAGCuGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 11904 0.69 0.639623
Target:  5'- cGUgcUCGCCGGGUuccUGaCGACGGCCAcGGu -3'
miRNA:   3'- uCA--GGCGGUCCA---GCaGCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 12164 0.68 0.684829
Target:  5'- --aUCGCCcGGaUCGUCGccgccgacgccgccGCGGCCGGGc -3'
miRNA:   3'- ucaGGCGGuCC-AGCAGC--------------UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 12917 0.71 0.53448
Target:  5'- gAGUaCCGCCuGGcCGUCGACGaCCuGGc -3'
miRNA:   3'- -UCA-GGCGGuCCaGCAGCUGCcGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 27611 0.67 0.762067
Target:  5'- cGUCCaCCcGGUCG--GACGGCCGGu -3'
miRNA:   3'- uCAGGcGGuCCAGCagCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 29204 0.7 0.591412
Target:  5'- cGUCCGUCcGG-CgGUCGGCGGCCGucGGc -3'
miRNA:   3'- uCAGGCGGuCCaG-CAGCUGCCGGU--CC- -5'
11136 5' -60.2 NC_002794.1 + 30070 0.66 0.805471
Target:  5'- gGGUCCggucGCCcGGUCGaCGaggcgcGCGGCCGGu -3'
miRNA:   3'- -UCAGG----CGGuCCAGCaGC------UGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 31375 0.68 0.725454
Target:  5'- cGUCCuCCuccccGUCGUCGGCGGCCc-- -3'
miRNA:   3'- uCAGGcGGuc---CAGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 32246 0.66 0.829894
Target:  5'- aGGUCCuGCagcugcuGG-CGcUCGACGGCCGGc -3'
miRNA:   3'- -UCAGG-CGgu-----CCaGC-AGCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 32927 0.74 0.371422
Target:  5'- aGGUCgGCgGGaagCGcUCGGCGGCCAGGg -3'
miRNA:   3'- -UCAGgCGgUCca-GC-AGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 34070 0.67 0.753049
Target:  5'- --cCCGCCGuuccCGcCGGCGGCCGGGc -3'
miRNA:   3'- ucaGGCGGUcca-GCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 37133 0.7 0.61066
Target:  5'- cAGcUCCGCCGGGUCGagGGCGcagcuCCAGu -3'
miRNA:   3'- -UC-AGGCGGUCCAGCagCUGCc----GGUCc -5'
11136 5' -60.2 NC_002794.1 + 43008 0.68 0.738424
Target:  5'- cGGUCCGaguagcuccgCAGGUCGUCGGCcuccaucgcgcggcaGGCCGa- -3'
miRNA:   3'- -UCAGGCg---------GUCCAGCAGCUG---------------CCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 43964 0.66 0.837724
Target:  5'- uGGUCCGuCCAgaugagcuGGUCGUUGGa-GCCGGa -3'
miRNA:   3'- -UCAGGC-GGU--------CCAGCAGCUgcCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 44293 0.67 0.753049
Target:  5'- cGcCCGCCGGGcCGgCGA-GGCgGGGa -3'
miRNA:   3'- uCaGGCGGUCCaGCaGCUgCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 44451 0.68 0.725454
Target:  5'- cGcCCGCCcGGaCGUCGGCGGCgGa- -3'
miRNA:   3'- uCaGGCGGuCCaGCAGCUGCCGgUcc -5'
11136 5' -60.2 NC_002794.1 + 47737 0.76 0.31363
Target:  5'- cAGcCCGCCGGGUCcacgUGGCGGCCGuGGu -3'
miRNA:   3'- -UCaGGCGGUCCAGca--GCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 48849 0.78 0.222118
Target:  5'- gAGaUCCGgCAGGgcgcgauagucccCGUCGGCGGCCAGGu -3'
miRNA:   3'- -UC-AGGCgGUCCa------------GCAGCUGCCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.