miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 49036 0.72 0.497609
Target:  5'- cGUCCGgCGcGGUCGUCaGCGuCCAGGg -3'
miRNA:   3'- uCAGGCgGU-CCAGCAGcUGCcGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 49391 0.66 0.813761
Target:  5'- cAGgCCGCCGccGUCGgccaCGGCGGCCGcGGc -3'
miRNA:   3'- -UCaGGCGGUc-CAGCa---GCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 50758 0.68 0.687694
Target:  5'- cGUCCGCCccGGG-CGgcggCGACGGCgcgucuCGGGc -3'
miRNA:   3'- uCAGGCGG--UCCaGCa---GCUGCCG------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 55345 0.66 0.829894
Target:  5'- gGGUCgCGCCcgAGG-CGgccgaGGCGGCCgAGGc -3'
miRNA:   3'- -UCAG-GCGG--UCCaGCag---CUGCCGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 57997 0.67 0.770984
Target:  5'- ---gCGCCAGGccuUCGUCG-CcGCCGGGg -3'
miRNA:   3'- ucagGCGGUCC---AGCAGCuGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 62682 0.67 0.770097
Target:  5'- --aCCGCCugcGGGUgcagcugUGUCGGCGGCCGc- -3'
miRNA:   3'- ucaGGCGG---UCCA-------GCAGCUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 66533 0.67 0.788478
Target:  5'- gGGUCCGCgaAGGUCGgcgcCGGCGGaUAGu -3'
miRNA:   3'- -UCAGGCGg-UCCAGCa---GCUGCCgGUCc -5'
11136 5' -60.2 NC_002794.1 + 66643 0.66 0.84081
Target:  5'- aGGUCCGuCCGGGggcaucgguaacggCGUCGuggucaACGGCCccGGc -3'
miRNA:   3'- -UCAGGC-GGUCCa-------------GCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 70327 0.66 0.829894
Target:  5'- cGcCCGCgAaGaCGcCGACGGCCGGGc -3'
miRNA:   3'- uCaGGCGgUcCaGCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 70894 0.76 0.31363
Target:  5'- cGagCGCCAGGUCGgugagcaCGuCGGCCAGGc -3'
miRNA:   3'- uCagGCGGUCCAGCa------GCuGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 71083 0.73 0.419293
Target:  5'- gGGUCCagacgaacaGCC-GGUCGcCGGCGGCCuGGc -3'
miRNA:   3'- -UCAGG---------CGGuCCAGCaGCUGCCGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 71347 0.67 0.753049
Target:  5'- cGUCCGCCAGG-CGgCGcagcagguGCGGCagccgcccCAGGa -3'
miRNA:   3'- uCAGGCGGUCCaGCaGC--------UGCCG--------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 72547 0.68 0.716102
Target:  5'- ---gCGCguGGUCG-CGcaacGCGGCCGGGa -3'
miRNA:   3'- ucagGCGguCCAGCaGC----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 76317 0.67 0.753049
Target:  5'- ---gCGCCGGcaaccaGUCGUccucccuccCGGCGGCCGGGa -3'
miRNA:   3'- ucagGCGGUC------CAGCA---------GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 76605 0.69 0.627067
Target:  5'- --cCCGCCGGGUCGUCgucaguagcccuuaGACguGGCCGuGGc -3'
miRNA:   3'- ucaGGCGGUCCAGCAG--------------CUG--CCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 77671 0.7 0.581825
Target:  5'- gGGUCUGCgGGGUCaUCGuCGGCCu-- -3'
miRNA:   3'- -UCAGGCGgUCCAGcAGCuGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 80446 0.71 0.525165
Target:  5'- cGG-CCGCCGGccCGUCGGCGGCCc-- -3'
miRNA:   3'- -UCaGGCGGUCcaGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 83862 0.69 0.629965
Target:  5'- aAG-CCGUCGucccGGUCGgcgCGACGGCCccGGGc -3'
miRNA:   3'- -UCaGGCGGU----CCAGCa--GCUGCCGG--UCC- -5'
11136 5' -60.2 NC_002794.1 + 86832 0.7 0.601026
Target:  5'- --cUCGCCGGGaUCGggUCGGCGGCCccgccGGGa -3'
miRNA:   3'- ucaGGCGGUCC-AGC--AGCUGCCGG-----UCC- -5'
11136 5' -60.2 NC_002794.1 + 86989 0.66 0.837724
Target:  5'- aGGUCCGgCGGcUU-UCGGCGGCguGGg -3'
miRNA:   3'- -UCAGGCgGUCcAGcAGCUGCCGguCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.