Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 114756 | 0.72 | 0.461922 |
Target: 5'- cGcCCGCCGgcgccGGUCcUCGGCGGCgAGGa -3' miRNA: 3'- uCaGGCGGU-----CCAGcAGCUGCCGgUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 115317 | 0.68 | 0.716102 |
Target: 5'- cGUCCGCaC-GGUCGccgCGGCGuCCGGGc -3' miRNA: 3'- uCAGGCG-GuCCAGCa--GCUGCcGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 116124 | 0.84 | 0.09631 |
Target: 5'- gAGUCCGCCGcGGcggCGgcggCGGCGGCCAGGg -3' miRNA: 3'- -UCAGGCGGU-CCa--GCa---GCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 116944 | 0.68 | 0.687694 |
Target: 5'- cGUCC-CCGGcGgcggCGUCGGCGGgCgCAGGa -3' miRNA: 3'- uCAGGcGGUC-Ca---GCAGCUGCC-G-GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 118261 | 0.69 | 0.674298 |
Target: 5'- aGGUCgGCCGGGgcggcggcgccggCGUCGGggacCGcGCCGGGc -3' miRNA: 3'- -UCAGgCGGUCCa------------GCAGCU----GC-CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119498 | 0.77 | 0.24568 |
Target: 5'- cGUCCuCgGGGUCGUCGGCGGCgCGGa -3' miRNA: 3'- uCAGGcGgUCCAGCAGCUGCCG-GUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119542 | 0.67 | 0.770984 |
Target: 5'- cGUCCGC--GGcCGUCGcCGGCCAc- -3' miRNA: 3'- uCAGGCGguCCaGCAGCuGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119756 | 0.68 | 0.725454 |
Target: 5'- cAGcUCCGgaCCAGGUCG-CGGcCGGCCuccAGGc -3' miRNA: 3'- -UC-AGGC--GGUCCAGCaGCU-GCCGG---UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 119795 | 0.67 | 0.77979 |
Target: 5'- cGGUCCGCCgacuugAGcGUCG-CG-UGGCuCAGGa -3' miRNA: 3'- -UCAGGCGG------UC-CAGCaGCuGCCG-GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 124238 | 0.66 | 0.802956 |
Target: 5'- aAGUgCGCCuguuccccgcgcgcGGGUaGUCGcCGGCCAGc -3' miRNA: 3'- -UCAgGCGG--------------UCCAgCAGCuGCCGGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 124378 | 0.7 | 0.607768 |
Target: 5'- cGUUCGCCucGGUCG-CGGCGGCgcgucgccggucguCGGGg -3' miRNA: 3'- uCAGGCGGu-CCAGCaGCUGCCG--------------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 129924 | 0.68 | 0.687694 |
Target: 5'- -aUUCGCCAGGcCGUggCGACGGCgGcGGc -3' miRNA: 3'- ucAGGCGGUCCaGCA--GCUGCCGgU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 133998 | 0.66 | 0.837724 |
Target: 5'- aGGUCgguCGCCGGGUgCGagCGcugcACGGUCGGGu -3' miRNA: 3'- -UCAG---GCGGUCCA-GCa-GC----UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 135598 | 0.74 | 0.394889 |
Target: 5'- gGGUCCGUCGGGUCGgaagCGGauCGGUcgCAGGu -3' miRNA: 3'- -UCAGGCGGUCCAGCa---GCU--GCCG--GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 137464 | 0.66 | 0.837724 |
Target: 5'- -aUCCGCCG---UGUCGGCGGCCu-- -3' miRNA: 3'- ucAGGCGGUccaGCAGCUGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 138390 | 0.68 | 0.725454 |
Target: 5'- gGG-CUGCCagaaggcgucgAGGUCGUCGcCGGCCGc- -3' miRNA: 3'- -UCaGGCGG-----------UCCAGCAGCuGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 139441 | 0.76 | 0.293139 |
Target: 5'- uGUCCGCgcgcgccgaucggCAGGUCGUCG-UGcGCCAGGa -3' miRNA: 3'- uCAGGCG-------------GUCCAGCAGCuGC-CGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 140674 | 0.69 | 0.629965 |
Target: 5'- gGGUCgGgCgCAGGUCGgugCGACGGaCCGGc -3' miRNA: 3'- -UCAGgC-G-GUCCAGCa--GCUGCC-GGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 143025 | 0.72 | 0.488567 |
Target: 5'- cGGUCgGCCGGGUCGaCGugcaggGCcGCCAGGu -3' miRNA: 3'- -UCAGgCGGUCCAGCaGC------UGcCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 146029 | 0.67 | 0.753049 |
Target: 5'- cAGUCCGCUcgaucuccGGGaccCGUCGACGaCCgAGGa -3' miRNA: 3'- -UCAGGCGG--------UCCa--GCAGCUGCcGG-UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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