miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 195037 0.67 0.743935
Target:  5'- --gCCGCCAGGugcaucgucgUCGUCGACaGGUCGa- -3'
miRNA:   3'- ucaGGCGGUCC----------AGCAGCUG-CCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 192907 0.66 0.817037
Target:  5'- cGUCCGCgAacGGUCG-CGAguccaucgagaugaaCGGCCAGc -3'
miRNA:   3'- uCAGGCGgU--CCAGCaGCU---------------GCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 192726 0.76 0.293784
Target:  5'- --aUCGCCAGGUCGUCGGCcaGCCGGu -3'
miRNA:   3'- ucaGGCGGUCCAGCAGCUGc-CGGUCc -5'
11136 5' -60.2 NC_002794.1 + 192614 0.71 0.543853
Target:  5'- -cUCCGCCAGGUgcggacaGUCgGGCGGCCGc- -3'
miRNA:   3'- ucAGGCGGUCCAg------CAG-CUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 190348 0.69 0.678132
Target:  5'- -cUgCGUCAGGUCGUCGgccgcGCGGCgCAGcGg -3'
miRNA:   3'- ucAgGCGGUCCAGCAGC-----UGCCG-GUC-C- -5'
11136 5' -60.2 NC_002794.1 + 190009 0.75 0.341644
Target:  5'- cGGcCCGuCCGGGUCcaUCGGCGGCCGGu -3'
miRNA:   3'- -UCaGGC-GGUCCAGc-AGCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 189004 0.74 0.402922
Target:  5'- cAGcUCU-CCAGGUCG-CGACaGGCCAGGa -3'
miRNA:   3'- -UC-AGGcGGUCCAGCaGCUG-CCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 188352 0.68 0.734734
Target:  5'- cGUCgCGCCcguccGGcCGgCGGCGGCCgAGGg -3'
miRNA:   3'- uCAG-GCGGu----CCaGCaGCUGCCGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 188156 0.69 0.658916
Target:  5'- aGGUCgGCCGGGUCG--GACaGGUCGGa -3'
miRNA:   3'- -UCAGgCGGUCCAGCagCUG-CCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 187451 0.67 0.770097
Target:  5'- cGUCUGCCgccgcucGGcGUCGcUCGGCGcgcGCCGGGc -3'
miRNA:   3'- uCAGGCGG-------UC-CAGC-AGCUGC---CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 186274 0.66 0.805471
Target:  5'- --aCCGCCuGGcgCGgCGgcaccGCGGCCAGGc -3'
miRNA:   3'- ucaGGCGGuCCa-GCaGC-----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 184574 0.66 0.837724
Target:  5'- --gCCGCCGcGG-CGgCGGCGGCCAc- -3'
miRNA:   3'- ucaGGCGGU-CCaGCaGCUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 182940 0.71 0.543853
Target:  5'- uAGUCCggcGCCGGGcUCGagccgaCGGCGGCCGGc -3'
miRNA:   3'- -UCAGG---CGGUCC-AGCa-----GCUGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 182210 0.68 0.697214
Target:  5'- cGUCgCGCCAcGGggcucCGACGGUCAGGc -3'
miRNA:   3'- uCAG-GCGGU-CCagca-GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 180917 0.67 0.77979
Target:  5'- cGGUCuCGCCGGcGcCGUCGGaGGUCGGu -3'
miRNA:   3'- -UCAG-GCGGUC-CaGCAGCUgCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 179103 0.71 0.553279
Target:  5'- --aCCGUCcGGUCGUCcGCGGuCCGGGc -3'
miRNA:   3'- ucaGGCGGuCCAGCAGcUGCC-GGUCC- -5'
11136 5' -60.2 NC_002794.1 + 156522 0.7 0.591412
Target:  5'- gAGUCCGCggugaGGGUucCGUCGcguCGGCCGuGGa -3'
miRNA:   3'- -UCAGGCGg----UCCA--GCAGCu--GCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 151719 0.66 0.797041
Target:  5'- cAGUCgCGCgaAGGaCGUCGuCGGCCGccGGu -3'
miRNA:   3'- -UCAG-GCGg-UCCaGCAGCuGCCGGU--CC- -5'
11136 5' -60.2 NC_002794.1 + 148139 0.67 0.77979
Target:  5'- gGGgCCGCCGGGgCGagGGCGGUCGcgacGGa -3'
miRNA:   3'- -UCaGGCGGUCCaGCagCUGCCGGU----CC- -5'
11136 5' -60.2 NC_002794.1 + 147017 0.69 0.64831
Target:  5'- cGG-CCGCCGgcgcucGGUcuaaggacgaagcCGUCGGCGGCCGGu -3'
miRNA:   3'- -UCaGGCGGU------CCA-------------GCAGCUGCCGGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.