miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 146029 0.67 0.753049
Target:  5'- cAGUCCGCUcgaucuccGGGaccCGUCGACGaCCgAGGa -3'
miRNA:   3'- -UCAGGCGG--------UCCa--GCAGCUGCcGG-UCC- -5'
11136 5' -60.2 NC_002794.1 + 143025 0.72 0.488567
Target:  5'- cGGUCgGCCGGGUCGaCGugcaggGCcGCCAGGu -3'
miRNA:   3'- -UCAGgCGGUCCAGCaGC------UGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 140674 0.69 0.629965
Target:  5'- gGGUCgGgCgCAGGUCGgugCGACGGaCCGGc -3'
miRNA:   3'- -UCAGgC-G-GUCCAGCa--GCUGCC-GGUCc -5'
11136 5' -60.2 NC_002794.1 + 139441 0.76 0.293139
Target:  5'- uGUCCGCgcgcgccgaucggCAGGUCGUCG-UGcGCCAGGa -3'
miRNA:   3'- uCAGGCG-------------GUCCAGCAGCuGC-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 138390 0.68 0.725454
Target:  5'- gGG-CUGCCagaaggcgucgAGGUCGUCGcCGGCCGc- -3'
miRNA:   3'- -UCaGGCGG-----------UCCAGCAGCuGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 137464 0.66 0.837724
Target:  5'- -aUCCGCCG---UGUCGGCGGCCu-- -3'
miRNA:   3'- ucAGGCGGUccaGCAGCUGCCGGucc -5'
11136 5' -60.2 NC_002794.1 + 135598 0.74 0.394889
Target:  5'- gGGUCCGUCGGGUCGgaagCGGauCGGUcgCAGGu -3'
miRNA:   3'- -UCAGGCGGUCCAGCa---GCU--GCCG--GUCC- -5'
11136 5' -60.2 NC_002794.1 + 133998 0.66 0.837724
Target:  5'- aGGUCgguCGCCGGGUgCGagCGcugcACGGUCGGGu -3'
miRNA:   3'- -UCAG---GCGGUCCA-GCa-GC----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 129924 0.68 0.687694
Target:  5'- -aUUCGCCAGGcCGUggCGACGGCgGcGGc -3'
miRNA:   3'- ucAGGCGGUCCaGCA--GCUGCCGgU-CC- -5'
11136 5' -60.2 NC_002794.1 + 124378 0.7 0.607768
Target:  5'- cGUUCGCCucGGUCG-CGGCGGCgcgucgccggucguCGGGg -3'
miRNA:   3'- uCAGGCGGu-CCAGCaGCUGCCG--------------GUCC- -5'
11136 5' -60.2 NC_002794.1 + 124238 0.66 0.802956
Target:  5'- aAGUgCGCCuguuccccgcgcgcGGGUaGUCGcCGGCCAGc -3'
miRNA:   3'- -UCAgGCGG--------------UCCAgCAGCuGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 119795 0.67 0.77979
Target:  5'- cGGUCCGCCgacuugAGcGUCG-CG-UGGCuCAGGa -3'
miRNA:   3'- -UCAGGCGG------UC-CAGCaGCuGCCG-GUCC- -5'
11136 5' -60.2 NC_002794.1 + 119756 0.68 0.725454
Target:  5'- cAGcUCCGgaCCAGGUCG-CGGcCGGCCuccAGGc -3'
miRNA:   3'- -UC-AGGC--GGUCCAGCaGCU-GCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 119542 0.67 0.770984
Target:  5'- cGUCCGC--GGcCGUCGcCGGCCAc- -3'
miRNA:   3'- uCAGGCGguCCaGCAGCuGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 119498 0.77 0.24568
Target:  5'- cGUCCuCgGGGUCGUCGGCGGCgCGGa -3'
miRNA:   3'- uCAGGcGgUCCAGCAGCUGCCG-GUCc -5'
11136 5' -60.2 NC_002794.1 + 118261 0.69 0.674298
Target:  5'- aGGUCgGCCGGGgcggcggcgccggCGUCGGggacCGcGCCGGGc -3'
miRNA:   3'- -UCAGgCGGUCCa------------GCAGCU----GC-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 116944 0.68 0.687694
Target:  5'- cGUCC-CCGGcGgcggCGUCGGCGGgCgCAGGa -3'
miRNA:   3'- uCAGGcGGUC-Ca---GCAGCUGCC-G-GUCC- -5'
11136 5' -60.2 NC_002794.1 + 116124 0.84 0.09631
Target:  5'- gAGUCCGCCGcGGcggCGgcggCGGCGGCCAGGg -3'
miRNA:   3'- -UCAGGCGGU-CCa--GCa---GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 115317 0.68 0.716102
Target:  5'- cGUCCGCaC-GGUCGccgCGGCGuCCGGGc -3'
miRNA:   3'- uCAGGCG-GuCCAGCa--GCUGCcGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 114756 0.72 0.461922
Target:  5'- cGcCCGCCGgcgccGGUCcUCGGCGGCgAGGa -3'
miRNA:   3'- uCaGGCGGU-----CCAGcAGCUGCCGgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.