miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 114335 0.67 0.753049
Target:  5'- uAGUcCCGCCGcagcGGcUCGUCcGCcGCCAGGg -3'
miRNA:   3'- -UCA-GGCGGU----CC-AGCAGcUGcCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 113685 0.67 0.770984
Target:  5'- aGGcCCGCCAc--CGUCGGCaGcGCCAGGu -3'
miRNA:   3'- -UCaGGCGGUccaGCAGCUG-C-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 113525 0.71 0.553279
Target:  5'- gAGcUCCGCCGGcucggCGUCGcCGGCCcGGa -3'
miRNA:   3'- -UC-AGGCGGUCca---GCAGCuGCCGGuCC- -5'
11136 5' -60.2 NC_002794.1 + 112308 0.69 0.668537
Target:  5'- gGGUCCGaCUucGG-CGcCGACGGCgGGGa -3'
miRNA:   3'- -UCAGGC-GGu-CCaGCaGCUGCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 111633 0.67 0.753049
Target:  5'- cGG-CCGCCGccGGUCGggCGccGCGGCCGcGGc -3'
miRNA:   3'- -UCaGGCGGU--CCAGCa-GC--UGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 109512 0.71 0.533546
Target:  5'- uGGUCCGCCcGGcccgcgcUCGuUCGGCgucgGGCCGGGc -3'
miRNA:   3'- -UCAGGCGGuCC-------AGC-AGCUG----CCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 107277 0.69 0.678132
Target:  5'- cGUCCGCCGccgucgccccGUCGUCGACGcuccucGCgGGGg -3'
miRNA:   3'- uCAGGCGGUc---------CAGCAGCUGC------CGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 107070 0.7 0.601026
Target:  5'- cGGcgCCGCCGGcauGUCGgagcCGACGGgCGGGg -3'
miRNA:   3'- -UCa-GGCGGUC---CAGCa---GCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 106726 0.7 0.595255
Target:  5'- gGGUCCGagaguucaacgugcuCCGGGucaacgaguccaUCGUCGugGGCCucaAGGa -3'
miRNA:   3'- -UCAGGC---------------GGUCC------------AGCAGCugCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 106342 0.84 0.093935
Target:  5'- cGGUUCGCCGGGUCGaCGGCGGgCGGGc -3'
miRNA:   3'- -UCAGGCGGUCCAGCaGCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 105710 0.66 0.813761
Target:  5'- -cUCCGCUcgAGGcgaUCG-CGGCGGCCgucGGGa -3'
miRNA:   3'- ucAGGCGG--UCC---AGCaGCUGCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 104791 0.66 0.837724
Target:  5'- --gCCGaCAGGcggugcugcuUCG-CGAUGGCCAGGu -3'
miRNA:   3'- ucaGGCgGUCC----------AGCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 104390 0.66 0.805471
Target:  5'- uAGUaCGUCAGGUgGUCGuccgccGCGGCCucGGc -3'
miRNA:   3'- -UCAgGCGGUCCAgCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 101610 0.66 0.829103
Target:  5'- cGGcCCGCCGGGcgggggugccguuUCGUCcgcgagcgugGGCGGgCGGGc -3'
miRNA:   3'- -UCaGGCGGUCC-------------AGCAG----------CUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 99455 0.68 0.697214
Target:  5'- --gCCGCCGGGgguaUCGGCGGCuCAGa -3'
miRNA:   3'- ucaGGCGGUCCagc-AGCUGCCG-GUCc -5'
11136 5' -60.2 NC_002794.1 + 95824 0.75 0.334474
Target:  5'- cGG-CgGCCGGGggagCGgcggCGGCGGCCGGGg -3'
miRNA:   3'- -UCaGgCGGUCCa---GCa---GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 95754 0.67 0.77979
Target:  5'- uGGUacUCGCgGGGcggCGgccgcgaCGGCGGCCGGGg -3'
miRNA:   3'- -UCA--GGCGgUCCa--GCa------GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 90594 0.68 0.725454
Target:  5'- cAGUcCCGUCGGGcC-UCGACGGUCGcGGu -3'
miRNA:   3'- -UCA-GGCGGUCCaGcAGCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 87319 0.73 0.453211
Target:  5'- cGGUCC-CCAGGUCcagCGGCGG-CAGGu -3'
miRNA:   3'- -UCAGGcGGUCCAGca-GCUGCCgGUCC- -5'
11136 5' -60.2 NC_002794.1 + 87025 0.66 0.829894
Target:  5'- gGGUCCGCaggaucCGGGgacCGgcgCGGCucggGGCCGGGu -3'
miRNA:   3'- -UCAGGCG------GUCCa--GCa--GCUG----CCGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.