Results 61 - 80 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11136 | 5' | -60.2 | NC_002794.1 | + | 86989 | 0.66 | 0.837724 |
Target: 5'- aGGUCCGgCGGcUU-UCGGCGGCguGGg -3' miRNA: 3'- -UCAGGCgGUCcAGcAGCUGCCGguCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 86832 | 0.7 | 0.601026 |
Target: 5'- --cUCGCCGGGaUCGggUCGGCGGCCccgccGGGa -3' miRNA: 3'- ucaGGCGGUCC-AGC--AGCUGCCGG-----UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 83862 | 0.69 | 0.629965 |
Target: 5'- aAG-CCGUCGucccGGUCGgcgCGACGGCCccGGGc -3' miRNA: 3'- -UCaGGCGGU----CCAGCa--GCUGCCGG--UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 80446 | 0.71 | 0.525165 |
Target: 5'- cGG-CCGCCGGccCGUCGGCGGCCc-- -3' miRNA: 3'- -UCaGGCGGUCcaGCAGCUGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 77671 | 0.7 | 0.581825 |
Target: 5'- gGGUCUGCgGGGUCaUCGuCGGCCu-- -3' miRNA: 3'- -UCAGGCGgUCCAGcAGCuGCCGGucc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 76605 | 0.69 | 0.627067 |
Target: 5'- --cCCGCCGGGUCGUCgucaguagcccuuaGACguGGCCGuGGc -3' miRNA: 3'- ucaGGCGGUCCAGCAG--------------CUG--CCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 76317 | 0.67 | 0.753049 |
Target: 5'- ---gCGCCGGcaaccaGUCGUccucccuccCGGCGGCCGGGa -3' miRNA: 3'- ucagGCGGUC------CAGCA---------GCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 72547 | 0.68 | 0.716102 |
Target: 5'- ---gCGCguGGUCG-CGcaacGCGGCCGGGa -3' miRNA: 3'- ucagGCGguCCAGCaGC----UGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 71347 | 0.67 | 0.753049 |
Target: 5'- cGUCCGCCAGG-CGgCGcagcagguGCGGCagccgcccCAGGa -3' miRNA: 3'- uCAGGCGGUCCaGCaGC--------UGCCG--------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 71083 | 0.73 | 0.419293 |
Target: 5'- gGGUCCagacgaacaGCC-GGUCGcCGGCGGCCuGGc -3' miRNA: 3'- -UCAGG---------CGGuCCAGCaGCUGCCGGuCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 70894 | 0.76 | 0.31363 |
Target: 5'- cGagCGCCAGGUCGgugagcaCGuCGGCCAGGc -3' miRNA: 3'- uCagGCGGUCCAGCa------GCuGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 70327 | 0.66 | 0.829894 |
Target: 5'- cGcCCGCgAaGaCGcCGACGGCCGGGc -3' miRNA: 3'- uCaGGCGgUcCaGCaGCUGCCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 66643 | 0.66 | 0.84081 |
Target: 5'- aGGUCCGuCCGGGggcaucgguaacggCGUCGuggucaACGGCCccGGc -3' miRNA: 3'- -UCAGGC-GGUCCa-------------GCAGC------UGCCGGu-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 66533 | 0.67 | 0.788478 |
Target: 5'- gGGUCCGCgaAGGUCGgcgcCGGCGGaUAGu -3' miRNA: 3'- -UCAGGCGg-UCCAGCa---GCUGCCgGUCc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 62682 | 0.67 | 0.770097 |
Target: 5'- --aCCGCCugcGGGUgcagcugUGUCGGCGGCCGc- -3' miRNA: 3'- ucaGGCGG---UCCA-------GCAGCUGCCGGUcc -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 57997 | 0.67 | 0.770984 |
Target: 5'- ---gCGCCAGGccuUCGUCG-CcGCCGGGg -3' miRNA: 3'- ucagGCGGUCC---AGCAGCuGcCGGUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 55345 | 0.66 | 0.829894 |
Target: 5'- gGGUCgCGCCcgAGG-CGgccgaGGCGGCCgAGGc -3' miRNA: 3'- -UCAG-GCGG--UCCaGCag---CUGCCGG-UCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 50758 | 0.68 | 0.687694 |
Target: 5'- cGUCCGCCccGGG-CGgcggCGACGGCgcgucuCGGGc -3' miRNA: 3'- uCAGGCGG--UCCaGCa---GCUGCCG------GUCC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 49391 | 0.66 | 0.813761 |
Target: 5'- cAGgCCGCCGccGUCGgccaCGGCGGCCGcGGc -3' miRNA: 3'- -UCaGGCGGUc-CAGCa---GCUGCCGGU-CC- -5' |
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11136 | 5' | -60.2 | NC_002794.1 | + | 49036 | 0.72 | 0.497609 |
Target: 5'- cGUCCGgCGcGGUCGUCaGCGuCCAGGg -3' miRNA: 3'- uCAGGCgGU-CCAGCAGcUGCcGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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