miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11136 5' -60.2 NC_002794.1 + 43964 0.66 0.837724
Target:  5'- uGGUCCGuCCAgaugagcuGGUCGUUGGa-GCCGGa -3'
miRNA:   3'- -UCAGGC-GGU--------CCAGCAGCUgcCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 86989 0.66 0.837724
Target:  5'- aGGUCCGgCGGcUU-UCGGCGGCguGGg -3'
miRNA:   3'- -UCAGGCgGUCcAGcAGCUGCCGguCC- -5'
11136 5' -60.2 NC_002794.1 + 104791 0.66 0.837724
Target:  5'- --gCCGaCAGGcggugcugcuUCG-CGAUGGCCAGGu -3'
miRNA:   3'- ucaGGCgGUCC----------AGCaGCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 133998 0.66 0.837724
Target:  5'- aGGUCgguCGCCGGGUgCGagCGcugcACGGUCGGGu -3'
miRNA:   3'- -UCAG---GCGGUCCA-GCa-GC----UGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 66643 0.66 0.84081
Target:  5'- aGGUCCGuCCGGGggcaucgguaacggCGUCGuggucaACGGCCccGGc -3'
miRNA:   3'- -UCAGGC-GGUCCa-------------GCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 105710 0.66 0.813761
Target:  5'- -cUCCGCUcgAGGcgaUCG-CGGCGGCCgucGGGa -3'
miRNA:   3'- ucAGGCGG--UCC---AGCaGCUGCCGG---UCC- -5'
11136 5' -60.2 NC_002794.1 + 49391 0.66 0.813761
Target:  5'- cAGgCCGCCGccGUCGgccaCGGCGGCCGcGGc -3'
miRNA:   3'- -UCaGGCGGUc-CAGCa---GCUGCCGGU-CC- -5'
11136 5' -60.2 NC_002794.1 + 62682 0.67 0.770097
Target:  5'- --aCCGCCugcGGGUgcagcugUGUCGGCGGCCGc- -3'
miRNA:   3'- ucaGGCGG---UCCA-------GCAGCUGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 119542 0.67 0.770984
Target:  5'- cGUCCGC--GGcCGUCGcCGGCCAc- -3'
miRNA:   3'- uCAGGCGguCCaGCAGCuGCCGGUcc -5'
11136 5' -60.2 NC_002794.1 + 113685 0.67 0.770984
Target:  5'- aGGcCCGCCAc--CGUCGGCaGcGCCAGGu -3'
miRNA:   3'- -UCaGGCGGUccaGCAGCUG-C-CGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 95754 0.67 0.77979
Target:  5'- uGGUacUCGCgGGGcggCGgccgcgaCGGCGGCCGGGg -3'
miRNA:   3'- -UCA--GGCGgUCCa--GCa------GCUGCCGGUCC- -5'
11136 5' -60.2 NC_002794.1 + 148139 0.67 0.77979
Target:  5'- gGGgCCGCCGGGgCGagGGCGGUCGcgacGGa -3'
miRNA:   3'- -UCaGGCGGUCCaGCagCUGCCGGU----CC- -5'
11136 5' -60.2 NC_002794.1 + 180917 0.67 0.77979
Target:  5'- cGGUCuCGCCGGcGcCGUCGGaGGUCGGu -3'
miRNA:   3'- -UCAG-GCGGUC-CaGCAGCUgCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 151719 0.66 0.797041
Target:  5'- cAGUCgCGCgaAGGaCGUCGuCGGCCGccGGu -3'
miRNA:   3'- -UCAG-GCGg-UCCaGCAGCuGCCGGU--CC- -5'
11136 5' -60.2 NC_002794.1 + 66533 0.67 0.788478
Target:  5'- gGGUCCGCgaAGGUCGgcgcCGGCGGaUAGu -3'
miRNA:   3'- -UCAGGCGg-UCCAGCa---GCUGCCgGUCc -5'
11136 5' -60.2 NC_002794.1 + 119795 0.67 0.77979
Target:  5'- cGGUCCGCCgacuugAGcGUCG-CG-UGGCuCAGGa -3'
miRNA:   3'- -UCAGGCGG------UC-CAGCaGCuGCCG-GUCC- -5'
11136 5' -60.2 NC_002794.1 + 104390 0.66 0.805471
Target:  5'- uAGUaCGUCAGGUgGUCGuccgccGCGGCCucGGc -3'
miRNA:   3'- -UCAgGCGGUCCAgCAGC------UGCCGGu-CC- -5'
11136 5' -60.2 NC_002794.1 + 4176 0.66 0.805471
Target:  5'- cGUCgCGgUGGGUCGUCGA-GGCaAGGc -3'
miRNA:   3'- uCAG-GCgGUCCAGCAGCUgCCGgUCC- -5'
11136 5' -60.2 NC_002794.1 + 124238 0.66 0.802956
Target:  5'- aAGUgCGCCuguuccccgcgcgcGGGUaGUCGcCGGCCAGc -3'
miRNA:   3'- -UCAgGCGG--------------UCCAgCAGCuGCCGGUCc -5'
11136 5' -60.2 NC_002794.1 + 30070 0.66 0.805471
Target:  5'- gGGUCCggucGCCcGGUCGaCGaggcgcGCGGCCGGu -3'
miRNA:   3'- -UCAGG----CGGuCCAGCaGC------UGCCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.