miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 3' -55.5 NC_002794.1 + 135680 0.66 0.96899
Target:  5'- aCGGGCaGGGGAG-UCGUGaCGGUcuccagguaGCGCu -3'
miRNA:   3'- -GCUUG-CCCUUCuGGCACcGCCA---------UGCG- -5'
11137 3' -55.5 NC_002794.1 + 162119 0.66 0.96899
Target:  5'- uGGuuAUGGGAAGACCGcGGUccGGUAUu- -3'
miRNA:   3'- gCU--UGCCCUUCUGGCaCCG--CCAUGcg -5'
11137 3' -55.5 NC_002794.1 + 139897 0.66 0.96899
Target:  5'- uGAuGCGGGccagccgcAGGCCGUcGGaCGGcACGCa -3'
miRNA:   3'- gCU-UGCCCu-------UCUGGCA-CC-GCCaUGCG- -5'
11137 3' -55.5 NC_002794.1 + 19108 0.66 0.96899
Target:  5'- cCGAGCaGaccuuGGACCGaGGCGGguuaaGCGCg -3'
miRNA:   3'- -GCUUGcCcu---UCUGGCaCCGCCa----UGCG- -5'
11137 3' -55.5 NC_002794.1 + 104288 0.66 0.96899
Target:  5'- cCGAACaGGAucucGGGCCG-GGUgcacuugaGGUugGCc -3'
miRNA:   3'- -GCUUGcCCU----UCUGGCaCCG--------CCAugCG- -5'
11137 3' -55.5 NC_002794.1 + 19449 0.66 0.96899
Target:  5'- cCGAGCGGGcacGAgCGgcGGCGGcgGCGg -3'
miRNA:   3'- -GCUUGCCCuu-CUgGCa-CCGCCa-UGCg -5'
11137 3' -55.5 NC_002794.1 + 144544 0.66 0.965985
Target:  5'- gGAACugucGGAGGA-CGUGaugcaGCGGUACGUg -3'
miRNA:   3'- gCUUGc---CCUUCUgGCAC-----CGCCAUGCG- -5'
11137 3' -55.5 NC_002794.1 + 91775 0.66 0.965985
Target:  5'- aGGACGGGcu-GCUGaaGGCGGUGCa- -3'
miRNA:   3'- gCUUGCCCuucUGGCa-CCGCCAUGcg -5'
11137 3' -55.5 NC_002794.1 + 109945 0.66 0.965985
Target:  5'- gGggUcaGGGAGGGCCG-GGgGGUccagccCGCu -3'
miRNA:   3'- gCuuG--CCCUUCUGGCaCCgCCAu-----GCG- -5'
11137 3' -55.5 NC_002794.1 + 21715 0.66 0.965674
Target:  5'- aCGGGCGcugcgucgcgaucGcGAGGCCGaaGCGGUGCGCc -3'
miRNA:   3'- -GCUUGC-------------CcUUCUGGCacCGCCAUGCG- -5'
11137 3' -55.5 NC_002794.1 + 126395 0.66 0.962781
Target:  5'- uGcGCGGcGgcGugCGcGGCGGU-CGCg -3'
miRNA:   3'- gCuUGCC-CuuCugGCaCCGCCAuGCG- -5'
11137 3' -55.5 NC_002794.1 + 147210 0.66 0.959372
Target:  5'- cCGu-CGGGccGGGGCCGgGGCGuugGCGCg -3'
miRNA:   3'- -GCuuGCCC--UUCUGGCaCCGCca-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 21916 0.66 0.959372
Target:  5'- -uGGCGGcGGAGACgacGGCGGcgGCGCg -3'
miRNA:   3'- gcUUGCC-CUUCUGgcaCCGCCa-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 32638 0.66 0.959372
Target:  5'- aGAGgGGGGcgacGACCGgGGCGacgGCGCc -3'
miRNA:   3'- gCUUgCCCUu---CUGGCaCCGCca-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 160468 0.66 0.959372
Target:  5'- ---gUGGGAAGAugauCCGcacgGGgGGUugGCg -3'
miRNA:   3'- gcuuGCCCUUCU----GGCa---CCgCCAugCG- -5'
11137 3' -55.5 NC_002794.1 + 119892 0.66 0.955755
Target:  5'- gGAACuGGcGGAUCuUGGCGGccgACGCc -3'
miRNA:   3'- gCUUGcCCuUCUGGcACCGCCa--UGCG- -5'
11137 3' -55.5 NC_002794.1 + 103591 0.67 0.951924
Target:  5'- gCGGuCGGGcAGGCaGcGGCGGcACGCg -3'
miRNA:   3'- -GCUuGCCCuUCUGgCaCCGCCaUGCG- -5'
11137 3' -55.5 NC_002794.1 + 115729 0.67 0.951924
Target:  5'- uGGGCGgucGGggGGCCcUGGaucaGGUACGg -3'
miRNA:   3'- gCUUGC---CCuuCUGGcACCg---CCAUGCg -5'
11137 3' -55.5 NC_002794.1 + 59183 0.67 0.951924
Target:  5'- --uGCuGGAcc-CCGUGGCGGUcgACGCg -3'
miRNA:   3'- gcuUGcCCUucuGGCACCGCCA--UGCG- -5'
11137 3' -55.5 NC_002794.1 + 103221 0.67 0.951924
Target:  5'- uGGACGGGAcgAGGCgcUGGCaGGUgAUGCu -3'
miRNA:   3'- gCUUGCCCU--UCUGgcACCG-CCA-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.