miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 3' -55.5 NC_002794.1 + 1431 0.69 0.88802
Target:  5'- aCGAcCGGGAgggGGACCGgGGCGcGUuuugucuACGUg -3'
miRNA:   3'- -GCUuGCCCU---UCUGGCaCCGC-CA-------UGCG- -5'
11137 3' -55.5 NC_002794.1 + 7821 0.72 0.759612
Target:  5'- uGAGCGGGAggggGGGCCGUccaucgggacgGGgGGUcaggaagaaaGCGCa -3'
miRNA:   3'- gCUUGCCCU----UCUGGCA-----------CCgCCA----------UGCG- -5'
11137 3' -55.5 NC_002794.1 + 11535 0.69 0.875069
Target:  5'- gCGGGCGaccGAGGACCGcGGCuGGU-CGCu -3'
miRNA:   3'- -GCUUGCc--CUUCUGGCaCCG-CCAuGCG- -5'
11137 3' -55.5 NC_002794.1 + 14446 0.68 0.918936
Target:  5'- uCGAugcuccGCGGGc-GACCGUGucgaGCGGcGCGCc -3'
miRNA:   3'- -GCU------UGCCCuuCUGGCAC----CGCCaUGCG- -5'
11137 3' -55.5 NC_002794.1 + 14572 0.67 0.928974
Target:  5'- gCGAGcCGGccGAccgaagcGGGCCGUGGCGaGcGCGCc -3'
miRNA:   3'- -GCUU-GCC--CU-------UCUGGCACCGC-CaUGCG- -5'
11137 3' -55.5 NC_002794.1 + 19108 0.66 0.96899
Target:  5'- cCGAGCaGaccuuGGACCGaGGCGGguuaaGCGCg -3'
miRNA:   3'- -GCUUGcCcu---UCUGGCaCCGCCa----UGCG- -5'
11137 3' -55.5 NC_002794.1 + 19449 0.66 0.96899
Target:  5'- cCGAGCGGGcacGAgCGgcGGCGGcgGCGg -3'
miRNA:   3'- -GCUUGCCCuu-CUgGCa-CCGCCa-UGCg -5'
11137 3' -55.5 NC_002794.1 + 21715 0.66 0.965674
Target:  5'- aCGGGCGcugcgucgcgaucGcGAGGCCGaaGCGGUGCGCc -3'
miRNA:   3'- -GCUUGC-------------CcUUCUGGCacCGCCAUGCG- -5'
11137 3' -55.5 NC_002794.1 + 21916 0.66 0.959372
Target:  5'- -uGGCGGcGGAGACgacGGCGGcgGCGCg -3'
miRNA:   3'- gcUUGCC-CUUCUGgcaCCGCCa-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 31719 0.68 0.918936
Target:  5'- uGcGCGGGAucccggaugAGACCG-GGCGG-GCGa -3'
miRNA:   3'- gCuUGCCCU---------UCUGGCaCCGCCaUGCg -5'
11137 3' -55.5 NC_002794.1 + 32638 0.66 0.959372
Target:  5'- aGAGgGGGGcgacGACCGgGGCGacgGCGCc -3'
miRNA:   3'- gCUUgCCCUu---CUGGCaCCGCca-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 37328 0.69 0.875069
Target:  5'- gGAGCGGuGggGcCCG-GGCGGca-GCa -3'
miRNA:   3'- gCUUGCC-CuuCuGGCaCCGCCaugCG- -5'
11137 3' -55.5 NC_002794.1 + 37731 0.7 0.812893
Target:  5'- gCGAGCGGcGgcG-CCGccGGCGGcgGCGCg -3'
miRNA:   3'- -GCUUGCC-CuuCuGGCa-CCGCCa-UGCG- -5'
11137 3' -55.5 NC_002794.1 + 37881 0.79 0.391988
Target:  5'- uCGGGCGGcGggGGCgGUGGCGGcgGCaGCg -3'
miRNA:   3'- -GCUUGCC-CuuCUGgCACCGCCa-UG-CG- -5'
11137 3' -55.5 NC_002794.1 + 42585 0.67 0.939125
Target:  5'- gCGGACGGaGGAGGgCGcGGCGGccgggaGCg -3'
miRNA:   3'- -GCUUGCC-CUUCUgGCaCCGCCaug---CG- -5'
11137 3' -55.5 NC_002794.1 + 52150 0.74 0.63347
Target:  5'- uCGAA-GGGAacucgaaccAGGCgGcGGCGGUGCGCa -3'
miRNA:   3'- -GCUUgCCCU---------UCUGgCaCCGCCAUGCG- -5'
11137 3' -55.5 NC_002794.1 + 52640 0.74 0.652324
Target:  5'- uCGAACGGGA--GCCGgagcGGCGGcaggcucUGCGCc -3'
miRNA:   3'- -GCUUGCCCUucUGGCa---CCGCC-------AUGCG- -5'
11137 3' -55.5 NC_002794.1 + 55174 0.67 0.936326
Target:  5'- cCGAGCGGGc-GACuCGaGGCGGcggcccuaacaccgGCGCg -3'
miRNA:   3'- -GCUUGCCCuuCUG-GCaCCGCCa-------------UGCG- -5'
11137 3' -55.5 NC_002794.1 + 55268 0.71 0.786841
Target:  5'- aGAGcCGGGggGcgGCgGUGGCGGcgACGa -3'
miRNA:   3'- gCUU-GCCCuuC--UGgCACCGCCa-UGCg -5'
11137 3' -55.5 NC_002794.1 + 56308 0.68 0.918936
Target:  5'- gCGGucGCGGucgcuGgcGGCCGUGGCcGGcgACGCg -3'
miRNA:   3'- -GCU--UGCC-----CuuCUGGCACCG-CCa-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.