miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 5' -56.1 NC_002794.1 + 63712 0.66 0.937053
Target:  5'- -cGCcgGCGCCGcCGgaCCg-CCGAUCCAa -3'
miRNA:   3'- caCG--CGCGGC-GCaaGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 181781 0.66 0.927009
Target:  5'- -cGCGcCGCCGCGUcucgUUCgggCCuugGAUCCAg -3'
miRNA:   3'- caCGC-GCGGCGCA----AGGaa-GG---UUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 11904 0.66 0.921637
Target:  5'- cGUGCuCGCCGgGUUCCUgaCGAcggCCAc -3'
miRNA:   3'- -CACGcGCGGCgCAAGGAagGUUa--GGU- -5'
11137 5' -56.1 NC_002794.1 + 49534 0.66 0.921637
Target:  5'- -cGCGCGCCGCGagcagaUCCUUgacCCAaaaGUCgAg -3'
miRNA:   3'- caCGCGCGGCGCa-----AGGAA---GGU---UAGgU- -5'
11137 5' -56.1 NC_002794.1 + 55062 0.66 0.916031
Target:  5'- -aGCGCGCCGUcg-CCc-CCGGUCCc -3'
miRNA:   3'- caCGCGCGGCGcaaGGaaGGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 34554 0.66 0.916031
Target:  5'- -cGCGUGCUGacccCGUUCCUcgugUCGAUCCu -3'
miRNA:   3'- caCGCGCGGC----GCAAGGAa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 102472 0.66 0.916031
Target:  5'- -gGCGCGUCgGCGUgCCggCCGGcuUCCAc -3'
miRNA:   3'- caCGCGCGG-CGCAaGGaaGGUU--AGGU- -5'
11137 5' -56.1 NC_002794.1 + 137083 0.66 0.915458
Target:  5'- -cGCGCGCCaugucgcccgcucGCGcUCCUUCCGcgaccUCCc -3'
miRNA:   3'- caCGCGCGG-------------CGCaAGGAAGGUu----AGGu -5'
11137 5' -56.1 NC_002794.1 + 92731 0.67 0.910193
Target:  5'- -cGCGCugGCUGCugcagCaCUUCCAGUCCAu -3'
miRNA:   3'- caCGCG--CGGCGcaa--G-GAAGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 41303 0.67 0.910193
Target:  5'- -cGCGgGCCGCGUggggUCU-CCGAggucUCCGa -3'
miRNA:   3'- caCGCgCGGCGCAa---GGAaGGUU----AGGU- -5'
11137 5' -56.1 NC_002794.1 + 115056 0.67 0.904124
Target:  5'- -gGCGgGCgGCaGcgCCgUCCAGUCCAc -3'
miRNA:   3'- caCGCgCGgCG-CaaGGaAGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 193369 0.67 0.904124
Target:  5'- gGUGCcacGgGCCGCGcUCCUcgCCGucGUCCGc -3'
miRNA:   3'- -CACG---CgCGGCGCaAGGAa-GGU--UAGGU- -5'
11137 5' -56.1 NC_002794.1 + 12017 0.67 0.904124
Target:  5'- aUGUGCGCCGcCGgcCCgggcgUCCGcgCCu -3'
miRNA:   3'- cACGCGCGGC-GCaaGGa----AGGUuaGGu -5'
11137 5' -56.1 NC_002794.1 + 69815 0.67 0.897826
Target:  5'- -cGC-CGCCGCGaccggcgUCCgcCCGGUCCGc -3'
miRNA:   3'- caCGcGCGGCGCa------AGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 27486 0.67 0.897826
Target:  5'- -cGuCGCGCCGagg-CCgcgCCAGUCCAu -3'
miRNA:   3'- caC-GCGCGGCgcaaGGaa-GGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 183469 0.67 0.897826
Target:  5'- -cGCcCGCCGCGagUCCgcggcCCGAUCCc -3'
miRNA:   3'- caCGcGCGGCGCa-AGGaa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 101532 0.67 0.897826
Target:  5'- gGUGCccgGCGCCaCGUUCCgaacgCCGuUCCGa -3'
miRNA:   3'- -CACG---CGCGGcGCAAGGaa---GGUuAGGU- -5'
11137 5' -56.1 NC_002794.1 + 12229 0.67 0.897826
Target:  5'- -gGCgGCGCCgGCGgcgccgUCCgcggcgCCGAUCCGg -3'
miRNA:   3'- caCG-CGCGG-CGCa-----AGGaa----GGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 192442 0.67 0.891302
Target:  5'- -gGCGCGUCGCGcgCCU-CgCAGUCg- -3'
miRNA:   3'- caCGCGCGGCGCaaGGAaG-GUUAGgu -5'
11137 5' -56.1 NC_002794.1 + 135976 0.67 0.889302
Target:  5'- -aGCccgGCGCCGgGcUCCUcuucgcuguccgggUCCAGUCCGc -3'
miRNA:   3'- caCG---CGCGGCgCaAGGA--------------AGGUUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.