miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 5' -56.1 NC_002794.1 + 101003 0.67 0.884556
Target:  5'- -aGC-UGCCGCGggCCUUCCuGUCgGg -3'
miRNA:   3'- caCGcGCGGCGCaaGGAAGGuUAGgU- -5'
11137 5' -56.1 NC_002794.1 + 92063 0.67 0.877592
Target:  5'- -gGCGUGCCGCGgccggUgCUgCCAGUCg- -3'
miRNA:   3'- caCGCGCGGCGCa----AgGAaGGUUAGgu -5'
11137 5' -56.1 NC_002794.1 + 35560 0.67 0.876884
Target:  5'- -cGCGCGCgCGCGUgguggcccaggcgUUCUUCCGcaCCGa -3'
miRNA:   3'- caCGCGCG-GCGCA-------------AGGAAGGUuaGGU- -5'
11137 5' -56.1 NC_002794.1 + 68982 0.68 0.870413
Target:  5'- -cGCGaCGCCgGCGUcgacgcuucUCCUUCCuccUCCGc -3'
miRNA:   3'- caCGC-GCGG-CGCA---------AGGAAGGuu-AGGU- -5'
11137 5' -56.1 NC_002794.1 + 23575 0.68 0.847645
Target:  5'- gGUGC-CGCCGCca-CCcgCCGAUCCAc -3'
miRNA:   3'- -CACGcGCGGCGcaaGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 80784 0.69 0.805974
Target:  5'- uGUGUcgccaccuGCGCCGCGUgcUCCU-CCAcgCCc -3'
miRNA:   3'- -CACG--------CGCGGCGCA--AGGAaGGUuaGGu -5'
11137 5' -56.1 NC_002794.1 + 56465 0.7 0.760464
Target:  5'- -gGCGCGCUGCGcgCCUUCgAAacgaggCCGg -3'
miRNA:   3'- caCGCGCGGCGCaaGGAAGgUUa-----GGU- -5'
11137 5' -56.1 NC_002794.1 + 99803 0.7 0.741421
Target:  5'- -cGCGCGCCGCGggcgCCggcgCCGucggCCGa -3'
miRNA:   3'- caCGCGCGGCGCaa--GGaa--GGUua--GGU- -5'
11137 5' -56.1 NC_002794.1 + 122324 0.7 0.731755
Target:  5'- cGUGCGCGUgGCGUUggcCCUggCC-GUCCGg -3'
miRNA:   3'- -CACGCGCGgCGCAA---GGAa-GGuUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 46206 0.7 0.731755
Target:  5'- -cGCuCGCCGcCGUUCCggCCAgcucGUCCAg -3'
miRNA:   3'- caCGcGCGGC-GCAAGGaaGGU----UAGGU- -5'
11137 5' -56.1 NC_002794.1 + 82884 0.71 0.702287
Target:  5'- cGUGCGCGCCucGCGUccgCCUcgCC-GUCCGc -3'
miRNA:   3'- -CACGCGCGG--CGCAa--GGAa-GGuUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 23723 0.71 0.700301
Target:  5'- -cGCGCGCgGCGggcccgacguaCCUUCCGAUCgAg -3'
miRNA:   3'- caCGCGCGgCGCaa---------GGAAGGUUAGgU- -5'
11137 5' -56.1 NC_002794.1 + 126293 0.71 0.692337
Target:  5'- cUGUGCGCCGCGcgCCUggCGGUgCAg -3'
miRNA:   3'- cACGCGCGGCGCaaGGAagGUUAgGU- -5'
11137 5' -56.1 NC_002794.1 + 101760 0.71 0.691339
Target:  5'- cGUGCGCGagaacguCCGCGcgUCCaUCCuGUCCGa -3'
miRNA:   3'- -CACGCGC-------GGCGCa-AGGaAGGuUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.