miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 5' -56.1 NC_002794.1 + 11904 0.66 0.921637
Target:  5'- cGUGCuCGCCGgGUUCCUgaCGAcggCCAc -3'
miRNA:   3'- -CACGcGCGGCgCAAGGAagGUUa--GGU- -5'
11137 5' -56.1 NC_002794.1 + 12017 0.67 0.904124
Target:  5'- aUGUGCGCCGcCGgcCCgggcgUCCGcgCCu -3'
miRNA:   3'- cACGCGCGGC-GCaaGGa----AGGUuaGGu -5'
11137 5' -56.1 NC_002794.1 + 12229 0.67 0.897826
Target:  5'- -gGCgGCGCCgGCGgcgccgUCCgcggcgCCGAUCCGg -3'
miRNA:   3'- caCG-CGCGG-CGCa-----AGGaa----GGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 23575 0.68 0.847645
Target:  5'- gGUGC-CGCCGCca-CCcgCCGAUCCAc -3'
miRNA:   3'- -CACGcGCGGCGcaaGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 23723 0.71 0.700301
Target:  5'- -cGCGCGCgGCGggcccgacguaCCUUCCGAUCgAg -3'
miRNA:   3'- caCGCGCGgCGCaa---------GGAAGGUUAGgU- -5'
11137 5' -56.1 NC_002794.1 + 27486 0.67 0.897826
Target:  5'- -cGuCGCGCCGagg-CCgcgCCAGUCCAu -3'
miRNA:   3'- caC-GCGCGGCgcaaGGaa-GGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 34554 0.66 0.916031
Target:  5'- -cGCGUGCUGacccCGUUCCUcgugUCGAUCCu -3'
miRNA:   3'- caCGCGCGGC----GCAAGGAa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 35560 0.67 0.876884
Target:  5'- -cGCGCGCgCGCGUgguggcccaggcgUUCUUCCGcaCCGa -3'
miRNA:   3'- caCGCGCG-GCGCA-------------AGGAAGGUuaGGU- -5'
11137 5' -56.1 NC_002794.1 + 41303 0.67 0.910193
Target:  5'- -cGCGgGCCGCGUggggUCU-CCGAggucUCCGa -3'
miRNA:   3'- caCGCgCGGCGCAa---GGAaGGUU----AGGU- -5'
11137 5' -56.1 NC_002794.1 + 46206 0.7 0.731755
Target:  5'- -cGCuCGCCGcCGUUCCggCCAgcucGUCCAg -3'
miRNA:   3'- caCGcGCGGC-GCAAGGaaGGU----UAGGU- -5'
11137 5' -56.1 NC_002794.1 + 49534 0.66 0.921637
Target:  5'- -cGCGCGCCGCGagcagaUCCUUgacCCAaaaGUCgAg -3'
miRNA:   3'- caCGCGCGGCGCa-----AGGAA---GGU---UAGgU- -5'
11137 5' -56.1 NC_002794.1 + 55062 0.66 0.916031
Target:  5'- -aGCGCGCCGUcg-CCc-CCGGUCCc -3'
miRNA:   3'- caCGCGCGGCGcaaGGaaGGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 56465 0.7 0.760464
Target:  5'- -gGCGCGCUGCGcgCCUUCgAAacgaggCCGg -3'
miRNA:   3'- caCGCGCGGCGCaaGGAAGgUUa-----GGU- -5'
11137 5' -56.1 NC_002794.1 + 63712 0.66 0.937053
Target:  5'- -cGCcgGCGCCGcCGgaCCg-CCGAUCCAa -3'
miRNA:   3'- caCG--CGCGGC-GCaaGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 68982 0.68 0.870413
Target:  5'- -cGCGaCGCCgGCGUcgacgcuucUCCUUCCuccUCCGc -3'
miRNA:   3'- caCGC-GCGG-CGCA---------AGGAAGGuu-AGGU- -5'
11137 5' -56.1 NC_002794.1 + 69815 0.67 0.897826
Target:  5'- -cGC-CGCCGCGaccggcgUCCgcCCGGUCCGc -3'
miRNA:   3'- caCGcGCGGCGCa------AGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 80784 0.69 0.805974
Target:  5'- uGUGUcgccaccuGCGCCGCGUgcUCCU-CCAcgCCc -3'
miRNA:   3'- -CACG--------CGCGGCGCA--AGGAaGGUuaGGu -5'
11137 5' -56.1 NC_002794.1 + 82884 0.71 0.702287
Target:  5'- cGUGCGCGCCucGCGUccgCCUcgCC-GUCCGc -3'
miRNA:   3'- -CACGCGCGG--CGCAa--GGAa-GGuUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 92063 0.67 0.877592
Target:  5'- -gGCGUGCCGCGgccggUgCUgCCAGUCg- -3'
miRNA:   3'- caCGCGCGGCGCa----AgGAaGGUUAGgu -5'
11137 5' -56.1 NC_002794.1 + 92731 0.67 0.910193
Target:  5'- -cGCGCugGCUGCugcagCaCUUCCAGUCCAu -3'
miRNA:   3'- caCGCG--CGGCGcaa--G-GAAGGUUAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.