miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 5' -56.1 NC_002794.1 + 99803 0.7 0.741421
Target:  5'- -cGCGCGCCGCGggcgCCggcgCCGucggCCGa -3'
miRNA:   3'- caCGCGCGGCGCaa--GGaa--GGUua--GGU- -5'
11137 5' -56.1 NC_002794.1 + 101003 0.67 0.884556
Target:  5'- -aGC-UGCCGCGggCCUUCCuGUCgGg -3'
miRNA:   3'- caCGcGCGGCGCaaGGAAGGuUAGgU- -5'
11137 5' -56.1 NC_002794.1 + 101532 0.67 0.897826
Target:  5'- gGUGCccgGCGCCaCGUUCCgaacgCCGuUCCGa -3'
miRNA:   3'- -CACG---CGCGGcGCAAGGaa---GGUuAGGU- -5'
11137 5' -56.1 NC_002794.1 + 101760 0.71 0.691339
Target:  5'- cGUGCGCGagaacguCCGCGcgUCCaUCCuGUCCGa -3'
miRNA:   3'- -CACGCGC-------GGCGCa-AGGaAGGuUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 102472 0.66 0.916031
Target:  5'- -gGCGCGUCgGCGUgCCggCCGGcuUCCAc -3'
miRNA:   3'- caCGCGCGG-CGCAaGGaaGGUU--AGGU- -5'
11137 5' -56.1 NC_002794.1 + 115056 0.67 0.904124
Target:  5'- -gGCGgGCgGCaGcgCCgUCCAGUCCAc -3'
miRNA:   3'- caCGCgCGgCG-CaaGGaAGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 122324 0.7 0.731755
Target:  5'- cGUGCGCGUgGCGUUggcCCUggCC-GUCCGg -3'
miRNA:   3'- -CACGCGCGgCGCAA---GGAa-GGuUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 126293 0.71 0.692337
Target:  5'- cUGUGCGCCGCGcgCCUggCGGUgCAg -3'
miRNA:   3'- cACGCGCGGCGCaaGGAagGUUAgGU- -5'
11137 5' -56.1 NC_002794.1 + 135976 0.67 0.889302
Target:  5'- -aGCccgGCGCCGgGcUCCUcuucgcuguccgggUCCAGUCCGc -3'
miRNA:   3'- caCG---CGCGGCgCaAGGA--------------AGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 137083 0.66 0.915458
Target:  5'- -cGCGCGCCaugucgcccgcucGCGcUCCUUCCGcgaccUCCc -3'
miRNA:   3'- caCGCGCGG-------------CGCaAGGAAGGUu----AGGu -5'
11137 5' -56.1 NC_002794.1 + 181781 0.66 0.927009
Target:  5'- -cGCGcCGCCGCGUcucgUUCgggCCuugGAUCCAg -3'
miRNA:   3'- caCGC-GCGGCGCA----AGGaa-GG---UUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 183469 0.67 0.897826
Target:  5'- -cGCcCGCCGCGagUCCgcggcCCGAUCCc -3'
miRNA:   3'- caCGcGCGGCGCa-AGGaa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 192442 0.67 0.891302
Target:  5'- -gGCGCGUCGCGcgCCU-CgCAGUCg- -3'
miRNA:   3'- caCGCGCGGCGCaaGGAaG-GUUAGgu -5'
11137 5' -56.1 NC_002794.1 + 193369 0.67 0.904124
Target:  5'- gGUGCcacGgGCCGCGcUCCUcgCCGucGUCCGc -3'
miRNA:   3'- -CACG---CgCGGCGCaAGGAa-GGU--UAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.