Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11137 | 5' | -56.1 | NC_002794.1 | + | 193369 | 0.67 | 0.904124 |
Target: 5'- gGUGCcacGgGCCGCGcUCCUcgCCGucGUCCGc -3' miRNA: 3'- -CACG---CgCGGCGCaAGGAa-GGU--UAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 192442 | 0.67 | 0.891302 |
Target: 5'- -gGCGCGUCGCGcgCCU-CgCAGUCg- -3' miRNA: 3'- caCGCGCGGCGCaaGGAaG-GUUAGgu -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 183469 | 0.67 | 0.897826 |
Target: 5'- -cGCcCGCCGCGagUCCgcggcCCGAUCCc -3' miRNA: 3'- caCGcGCGGCGCa-AGGaa---GGUUAGGu -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 181781 | 0.66 | 0.927009 |
Target: 5'- -cGCGcCGCCGCGUcucgUUCgggCCuugGAUCCAg -3' miRNA: 3'- caCGC-GCGGCGCA----AGGaa-GG---UUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 137083 | 0.66 | 0.915458 |
Target: 5'- -cGCGCGCCaugucgcccgcucGCGcUCCUUCCGcgaccUCCc -3' miRNA: 3'- caCGCGCGG-------------CGCaAGGAAGGUu----AGGu -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 135976 | 0.67 | 0.889302 |
Target: 5'- -aGCccgGCGCCGgGcUCCUcuucgcuguccgggUCCAGUCCGc -3' miRNA: 3'- caCG---CGCGGCgCaAGGA--------------AGGUUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 126293 | 0.71 | 0.692337 |
Target: 5'- cUGUGCGCCGCGcgCCUggCGGUgCAg -3' miRNA: 3'- cACGCGCGGCGCaaGGAagGUUAgGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 122324 | 0.7 | 0.731755 |
Target: 5'- cGUGCGCGUgGCGUUggcCCUggCC-GUCCGg -3' miRNA: 3'- -CACGCGCGgCGCAA---GGAa-GGuUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 115056 | 0.67 | 0.904124 |
Target: 5'- -gGCGgGCgGCaGcgCCgUCCAGUCCAc -3' miRNA: 3'- caCGCgCGgCG-CaaGGaAGGUUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 102472 | 0.66 | 0.916031 |
Target: 5'- -gGCGCGUCgGCGUgCCggCCGGcuUCCAc -3' miRNA: 3'- caCGCGCGG-CGCAaGGaaGGUU--AGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 101760 | 0.71 | 0.691339 |
Target: 5'- cGUGCGCGagaacguCCGCGcgUCCaUCCuGUCCGa -3' miRNA: 3'- -CACGCGC-------GGCGCa-AGGaAGGuUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 101532 | 0.67 | 0.897826 |
Target: 5'- gGUGCccgGCGCCaCGUUCCgaacgCCGuUCCGa -3' miRNA: 3'- -CACG---CGCGGcGCAAGGaa---GGUuAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 101003 | 0.67 | 0.884556 |
Target: 5'- -aGC-UGCCGCGggCCUUCCuGUCgGg -3' miRNA: 3'- caCGcGCGGCGCaaGGAAGGuUAGgU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 99803 | 0.7 | 0.741421 |
Target: 5'- -cGCGCGCCGCGggcgCCggcgCCGucggCCGa -3' miRNA: 3'- caCGCGCGGCGCaa--GGaa--GGUua--GGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 92731 | 0.67 | 0.910193 |
Target: 5'- -cGCGCugGCUGCugcagCaCUUCCAGUCCAu -3' miRNA: 3'- caCGCG--CGGCGcaa--G-GAAGGUUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 92063 | 0.67 | 0.877592 |
Target: 5'- -gGCGUGCCGCGgccggUgCUgCCAGUCg- -3' miRNA: 3'- caCGCGCGGCGCa----AgGAaGGUUAGgu -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 82884 | 0.71 | 0.702287 |
Target: 5'- cGUGCGCGCCucGCGUccgCCUcgCC-GUCCGc -3' miRNA: 3'- -CACGCGCGG--CGCAa--GGAa-GGuUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 80784 | 0.69 | 0.805974 |
Target: 5'- uGUGUcgccaccuGCGCCGCGUgcUCCU-CCAcgCCc -3' miRNA: 3'- -CACG--------CGCGGCGCA--AGGAaGGUuaGGu -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 69815 | 0.67 | 0.897826 |
Target: 5'- -cGC-CGCCGCGaccggcgUCCgcCCGGUCCGc -3' miRNA: 3'- caCGcGCGGCGCa------AGGaaGGUUAGGU- -5' |
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11137 | 5' | -56.1 | NC_002794.1 | + | 68982 | 0.68 | 0.870413 |
Target: 5'- -cGCGaCGCCgGCGUcgacgcuucUCCUUCCuccUCCGc -3' miRNA: 3'- caCGC-GCGG-CGCA---------AGGAAGGuu-AGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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