miRNA display CGI


Results 21 - 34 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11137 5' -56.1 NC_002794.1 + 49534 0.66 0.921637
Target:  5'- -cGCGCGCCGCGagcagaUCCUUgacCCAaaaGUCgAg -3'
miRNA:   3'- caCGCGCGGCGCa-----AGGAA---GGU---UAGgU- -5'
11137 5' -56.1 NC_002794.1 + 181781 0.66 0.927009
Target:  5'- -cGCGcCGCCGCGUcucgUUCgggCCuugGAUCCAg -3'
miRNA:   3'- caCGC-GCGGCGCA----AGGaa-GG---UUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 34554 0.66 0.916031
Target:  5'- -cGCGUGCUGacccCGUUCCUcgugUCGAUCCu -3'
miRNA:   3'- caCGCGCGGC----GCAAGGAa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 55062 0.66 0.916031
Target:  5'- -aGCGCGCCGUcg-CCc-CCGGUCCc -3'
miRNA:   3'- caCGCGCGGCGcaaGGaaGGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 92731 0.67 0.910193
Target:  5'- -cGCGCugGCUGCugcagCaCUUCCAGUCCAu -3'
miRNA:   3'- caCGCG--CGGCGcaa--G-GAAGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 137083 0.66 0.915458
Target:  5'- -cGCGCGCCaugucgcccgcucGCGcUCCUUCCGcgaccUCCc -3'
miRNA:   3'- caCGCGCGG-------------CGCaAGGAAGGUu----AGGu -5'
11137 5' -56.1 NC_002794.1 + 41303 0.67 0.910193
Target:  5'- -cGCGgGCCGCGUggggUCU-CCGAggucUCCGa -3'
miRNA:   3'- caCGCgCGGCGCAa---GGAaGGUU----AGGU- -5'
11137 5' -56.1 NC_002794.1 + 12017 0.67 0.904124
Target:  5'- aUGUGCGCCGcCGgcCCgggcgUCCGcgCCu -3'
miRNA:   3'- cACGCGCGGC-GCaaGGa----AGGUuaGGu -5'
11137 5' -56.1 NC_002794.1 + 193369 0.67 0.904124
Target:  5'- gGUGCcacGgGCCGCGcUCCUcgCCGucGUCCGc -3'
miRNA:   3'- -CACG---CgCGGCGCaAGGAa-GGU--UAGGU- -5'
11137 5' -56.1 NC_002794.1 + 115056 0.67 0.904124
Target:  5'- -gGCGgGCgGCaGcgCCgUCCAGUCCAc -3'
miRNA:   3'- caCGCgCGgCG-CaaGGaAGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 69815 0.67 0.897826
Target:  5'- -cGC-CGCCGCGaccggcgUCCgcCCGGUCCGc -3'
miRNA:   3'- caCGcGCGGCGCa------AGGaaGGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 27486 0.67 0.897826
Target:  5'- -cGuCGCGCCGagg-CCgcgCCAGUCCAu -3'
miRNA:   3'- caC-GCGCGGCgcaaGGaa-GGUUAGGU- -5'
11137 5' -56.1 NC_002794.1 + 183469 0.67 0.897826
Target:  5'- -cGCcCGCCGCGagUCCgcggcCCGAUCCc -3'
miRNA:   3'- caCGcGCGGCGCa-AGGaa---GGUUAGGu -5'
11137 5' -56.1 NC_002794.1 + 126293 0.71 0.692337
Target:  5'- cUGUGCGCCGCGcgCCUggCGGUgCAg -3'
miRNA:   3'- cACGCGCGGCGCaaGGAagGUUAgGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.