miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 8865 0.66 0.982988
Target:  5'- cCCUGcgaGUUCcucaCGGCCAGCCGCc- -3'
miRNA:   3'- -GGACug-UAAGauc-GCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 140891 0.66 0.982988
Target:  5'- uCCUGACc--CUGuCGACCGcGUgGCGGg -3'
miRNA:   3'- -GGACUGuaaGAUcGCUGGU-CGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 109155 0.66 0.982988
Target:  5'- --aGGCGggggagaUGGCGACgAGCgGCGGu -3'
miRNA:   3'- ggaCUGUaag----AUCGCUGgUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 56320 0.66 0.982988
Target:  5'- gCUGGCGgcc--GUGGCCGGCgaCGCGGc -3'
miRNA:   3'- gGACUGUaagauCGCUGGUCG--GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 4045 0.66 0.98101
Target:  5'- aCC-GGCAUcaugAGCGACCc-CCGCGGc -3'
miRNA:   3'- -GGaCUGUAaga-UCGCUGGucGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 104878 0.66 0.98101
Target:  5'- --aGGCGcgUgaAGCgGGCCGGCCGCGa -3'
miRNA:   3'- ggaCUGUa-AgaUCG-CUGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 111113 0.66 0.98101
Target:  5'- aCCgUGGCcgUCgacggcgccGGCGGCCGGUgcuccaCGCGGu -3'
miRNA:   3'- -GG-ACUGuaAGa--------UCGCUGGUCG------GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 94873 0.66 0.98101
Target:  5'- -gUGACGUUUacggAGCGGauCCGGCUGaCGGu -3'
miRNA:   3'- ggACUGUAAGa---UCGCU--GGUCGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 83755 0.66 0.980803
Target:  5'- cCCUGGCGUUCUGcccguacGaCGACgAcGCCGCc- -3'
miRNA:   3'- -GGACUGUAAGAU-------C-GCUGgU-CGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 71225 0.66 0.978865
Target:  5'- cCCggccGCGUagUGGCGGCCGG-CGUGGa -3'
miRNA:   3'- -GGac--UGUAagAUCGCUGGUCgGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 123440 0.66 0.978865
Target:  5'- -gUGACcgUCgccgAGCGGCUGGCCGa-- -3'
miRNA:   3'- ggACUGuaAGa---UCGCUGGUCGGCgcc -5'
11138 3' -54.2 NC_002794.1 + 124796 0.66 0.978188
Target:  5'- aCCUGACcaaGUUCUAcgugcaggacacguGCGACCuGUCgGCGa -3'
miRNA:   3'- -GGACUG---UAAGAU--------------CGCUGGuCGG-CGCc -5'
11138 3' -54.2 NC_002794.1 + 75350 0.66 0.976545
Target:  5'- aCCggcGACgGUUCgccacCGACCcGCCGCGGc -3'
miRNA:   3'- -GGa--CUG-UAAGauc--GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 149676 0.66 0.976545
Target:  5'- --gGGCGcgUCgcGCucGACUGGCCGCGGg -3'
miRNA:   3'- ggaCUGUa-AGauCG--CUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 23925 0.66 0.976303
Target:  5'- --gGGCGagCgAGCGAuccgagcCCGGCCGCGGc -3'
miRNA:   3'- ggaCUGUaaGaUCGCU-------GGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 61517 0.66 0.974044
Target:  5'- gCCgGACGgcggccgCcGGCGGCC-GCCGCGa -3'
miRNA:   3'- -GGaCUGUaa-----GaUCGCUGGuCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 1281 0.66 0.974044
Target:  5'- aCC-GGCcUUCUAagGACCGGCCGCuGGc -3'
miRNA:   3'- -GGaCUGuAAGAUcgCUGGUCGGCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 48346 0.66 0.974044
Target:  5'- cCCgGugGUacgcCUGcuccGCGACCAGCCGCc- -3'
miRNA:   3'- -GGaCugUAa---GAU----CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 30370 0.66 0.974044
Target:  5'- cCCUGGCuc-UUGGCGAUCgucauGGCCGCc- -3'
miRNA:   3'- -GGACUGuaaGAUCGCUGG-----UCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 113487 0.66 0.974044
Target:  5'- cUCUG-CAggagcUCgcgcGCGGCCgagAGCCGCGGa -3'
miRNA:   3'- -GGACuGUa----AGau--CGCUGG---UCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.