miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 124003 0.68 0.937777
Target:  5'- aUCU-ACGUga-AGCGGgCGGCCGCGGa -3'
miRNA:   3'- -GGAcUGUAagaUCGCUgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 33105 0.68 0.937777
Target:  5'- --cGGCGUgaacGUGAgCGGCCGCGGg -3'
miRNA:   3'- ggaCUGUAagauCGCUgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 65221 0.68 0.932933
Target:  5'- gCUcGCAUUCcacgGGCGGCgGucGCCGCGGc -3'
miRNA:   3'- gGAcUGUAAGa---UCGCUGgU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 11519 0.68 0.937777
Target:  5'- aCgUGACGaUCgagcugcgGGCGACCgaGGaCCGCGGc -3'
miRNA:   3'- -GgACUGUaAGa-------UCGCUGG--UC-GGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 133801 0.68 0.942392
Target:  5'- gCUGuuGg---GGCGAUCGGCCGCGa -3'
miRNA:   3'- gGACugUaagaUCGCUGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 79432 0.68 0.942392
Target:  5'- gCCcGGCGgcggCggcGGCGACCGGC-GCGGa -3'
miRNA:   3'- -GGaCUGUaa--Ga--UCGCUGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 184581 0.68 0.950939
Target:  5'- --cGGCGgc--GGCGGCCacgcgcGGCCGCGGg -3'
miRNA:   3'- ggaCUGUaagaUCGCUGG------UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 17940 0.68 0.950939
Target:  5'- cCCcGAC---CUGGCGGCCAcCCGCGa -3'
miRNA:   3'- -GGaCUGuaaGAUCGCUGGUcGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 87372 0.68 0.946779
Target:  5'- --cGGCGUUCUgGGCGGCgCGGCCagaGCGa -3'
miRNA:   3'- ggaCUGUAAGA-UCGCUG-GUCGG---CGCc -5'
11138 3' -54.2 NC_002794.1 + 192627 0.68 0.950939
Target:  5'- --gGACAgUCgGGCGGCCgcuccAGCCGCGc -3'
miRNA:   3'- ggaCUGUaAGaUCGCUGG-----UCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 145581 0.68 0.946779
Target:  5'- gCC-GACGgagcGGCGGCCGGCuccCGCGGa -3'
miRNA:   3'- -GGaCUGUaagaUCGCUGGUCG---GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 76514 0.68 0.942392
Target:  5'- cCCcGACcccgUCccaGGCcACCGGCCGCGGc -3'
miRNA:   3'- -GGaCUGua--AGa--UCGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 105950 0.69 0.911242
Target:  5'- gCUGuACGaacggCUGGgGGCC-GCCGCGGa -3'
miRNA:   3'- gGAC-UGUaa---GAUCgCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 14036 0.69 0.917011
Target:  5'- aCUGGCug-CUGGCGAUCcuuacGCCGaCGGc -3'
miRNA:   3'- gGACUGuaaGAUCGCUGGu----CGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 12494 0.69 0.917011
Target:  5'- aCCUGcACGUUCccgAGCcgcucGACCGGCgGCuGGg -3'
miRNA:   3'- -GGAC-UGUAAGa--UCG-----CUGGUCGgCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 149962 0.69 0.922549
Target:  5'- --gGACGU---GGcCGACCuGCCGCGGa -3'
miRNA:   3'- ggaCUGUAagaUC-GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 189757 0.69 0.927857
Target:  5'- --cGGCAcUCgguuucGGUGcaccGCCAGCCGCGGg -3'
miRNA:   3'- ggaCUGUaAGa-----UCGC----UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 143479 0.69 0.927857
Target:  5'- gCUGGCAgaCgauGUcGCUGGCCGCGGg -3'
miRNA:   3'- gGACUGUaaGau-CGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 191999 0.69 0.927857
Target:  5'- gCCggGACGg--UAGCGGCgguGGCCGCGGc -3'
miRNA:   3'- -GGa-CUGUaagAUCGCUGg--UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 138171 0.69 0.898384
Target:  5'- uUUGACGcUCUugaccucGGCGGCCAGCCGg-- -3'
miRNA:   3'- gGACUGUaAGA-------UCGCUGGUCGGCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.