Results 61 - 80 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11138 | 3' | -54.2 | NC_002794.1 | + | 143479 | 0.69 | 0.927857 |
Target: 5'- gCUGGCAgaCgauGUcGCUGGCCGCGGg -3' miRNA: 3'- gGACUGUaaGau-CGcUGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 191999 | 0.69 | 0.927857 |
Target: 5'- gCCggGACGg--UAGCGGCgguGGCCGCGGc -3' miRNA: 3'- -GGa-CUGUaagAUCGCUGg--UCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 189647 | 0.69 | 0.927857 |
Target: 5'- gCUGGCugaCUAGcCGGCUGGCCgaGCGGu -3' miRNA: 3'- gGACUGuaaGAUC-GCUGGUCGG--CGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 100738 | 0.7 | 0.864605 |
Target: 5'- gCUGACGcgCgcggAGCGcgucuaucgcugGCCGGUCGCGGa -3' miRNA: 3'- gGACUGUaaGa---UCGC------------UGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 113853 | 0.7 | 0.871191 |
Target: 5'- gCCUGGCGUgcagUUccggccaGGCGcGCuCGGCCGCGGc -3' miRNA: 3'- -GGACUGUAa---GA-------UCGC-UG-GUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 42065 | 0.7 | 0.864605 |
Target: 5'- -aUGAUGU--UGGcCGACUGGCCGCGGg -3' miRNA: 3'- ggACUGUAagAUC-GCUGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 34977 | 0.7 | 0.881793 |
Target: 5'- cCCUGGCcacgaaacuGCG-CCGGCUGCGGg -3' miRNA: 3'- -GGACUGuaagau---CGCuGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 98338 | 0.7 | 0.8859 |
Target: 5'- gCUGACGgccaUCUA-CGACCGGCCgaucgccgcGCGGc -3' miRNA: 3'- gGACUGUa---AGAUcGCUGGUCGG---------CGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 93980 | 0.7 | 0.89257 |
Target: 5'- cCCUGACcgcgCUcGGCGcggacgccggcGCCGGCgGCGGg -3' miRNA: 3'- -GGACUGuaa-GA-UCGC-----------UGGUCGgCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 95072 | 0.71 | 0.816716 |
Target: 5'- aCCUGACcugUCUccAGUGcuacgaggaGCUGGCCGCGGu -3' miRNA: 3'- -GGACUGua-AGA--UCGC---------UGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 20535 | 0.71 | 0.816716 |
Target: 5'- aCUGGCGUUCgcgacgacgGGCGACCGGaucCCGCc- -3' miRNA: 3'- gGACUGUAAGa--------UCGCUGGUC---GGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 91918 | 0.71 | 0.841488 |
Target: 5'- aCCUGGCcugggcCUGcGCGACCAGuCCGCa- -3' miRNA: 3'- -GGACUGuaa---GAU-CGCUGGUC-GGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 157660 | 0.71 | 0.841488 |
Target: 5'- uCCcGACGcgCUGGCGGCUugGGCCGCu- -3' miRNA: 3'- -GGaCUGUaaGAUCGCUGG--UCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 126048 | 0.71 | 0.852493 |
Target: 5'- gCCUGGCGgucggaCUGGUcgcgcgccuggccugGACCGGCCuGCGGc -3' miRNA: 3'- -GGACUGUaa----GAUCG---------------CUGGUCGG-CGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 63203 | 0.71 | 0.849387 |
Target: 5'- gUCUGACcgUCgaccugcGCGACCuGCCGCc- -3' miRNA: 3'- -GGACUGuaAGau-----CGCUGGuCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 37485 | 0.71 | 0.857094 |
Target: 5'- cCCUG-CGgc---GCGACCAGCCGCa- -3' miRNA: 3'- -GGACuGUaagauCGCUGGUCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 16288 | 0.72 | 0.790485 |
Target: 5'- gUUGGCGgagUCUAGCcuGgCGGCCGCGGc -3' miRNA: 3'- gGACUGUa--AGAUCGc-UgGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 187410 | 0.72 | 0.790485 |
Target: 5'- cCCUGcAgGUUCUcgAGCGucugcuggaagGCCAGCCGCGc -3' miRNA: 3'- -GGAC-UgUAAGA--UCGC-----------UGGUCGGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 156373 | 0.72 | 0.78779 |
Target: 5'- gUUGGCGUacacggggucuucuUCUagAGCGGCCGgcGCCGCGGc -3' miRNA: 3'- gGACUGUA--------------AGA--UCGCUGGU--CGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 119895 | 0.72 | 0.772294 |
Target: 5'- aCUGGCGgaucUUGGCGGCCGacGCCGgGGa -3' miRNA: 3'- gGACUGUaa--GAUCGCUGGU--CGGCgCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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