miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 42065 0.7 0.864605
Target:  5'- -aUGAUGU--UGGcCGACUGGCCGCGGg -3'
miRNA:   3'- ggACUGUAagAUC-GCUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 98338 0.7 0.8859
Target:  5'- gCUGACGgccaUCUA-CGACCGGCCgaucgccgcGCGGc -3'
miRNA:   3'- gGACUGUa---AGAUcGCUGGUCGG---------CGCC- -5'
11138 3' -54.2 NC_002794.1 + 138171 0.69 0.898384
Target:  5'- uUUGACGcUCUugaccucGGCGGCCAGCCGg-- -3'
miRNA:   3'- gGACUGUaAGA-------UCGCUGGUCGGCgcc -5'
11138 3' -54.2 NC_002794.1 + 14036 0.69 0.917011
Target:  5'- aCUGGCug-CUGGCGAUCcuuacGCCGaCGGc -3'
miRNA:   3'- gGACUGuaaGAUCGCUGGu----CGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 149962 0.69 0.922549
Target:  5'- --gGACGU---GGcCGACCuGCCGCGGa -3'
miRNA:   3'- ggaCUGUAagaUC-GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 12494 0.69 0.917011
Target:  5'- aCCUGcACGUUCccgAGCcgcucGACCGGCgGCuGGg -3'
miRNA:   3'- -GGAC-UGUAAGa--UCG-----CUGGUCGgCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 186277 0.69 0.896466
Target:  5'- gCCUGGCGcggCggcaccgcggccaGGCGGCCGgucGCCGCGGc -3'
miRNA:   3'- -GGACUGUaa-Ga------------UCGCUGGU---CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 143479 0.69 0.927857
Target:  5'- gCUGGCAgaCgauGUcGCUGGCCGCGGg -3'
miRNA:   3'- gGACUGUaaGau-CGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 105950 0.69 0.911242
Target:  5'- gCUGuACGaacggCUGGgGGCC-GCCGCGGa -3'
miRNA:   3'- gGAC-UGUaa---GAUCgCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 119500 0.69 0.911242
Target:  5'- uCCUcGGgGUcgUCggcGGCGcggaGCCGGCCGCGGa -3'
miRNA:   3'- -GGA-CUgUA--AGa--UCGC----UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 189757 0.69 0.927857
Target:  5'- --cGGCAcUCgguuucGGUGcaccGCCAGCCGCGGg -3'
miRNA:   3'- ggaCUGUaAGa-----UCGC----UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 189647 0.69 0.927857
Target:  5'- gCUGGCugaCUAGcCGGCUGGCCgaGCGGu -3'
miRNA:   3'- gGACUGuaaGAUC-GCUGGUCGG--CGCC- -5'
11138 3' -54.2 NC_002794.1 + 191999 0.69 0.927857
Target:  5'- gCCggGACGg--UAGCGGCgguGGCCGCGGc -3'
miRNA:   3'- -GGa-CUGUaagAUCGCUGg--UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 17940 0.68 0.950939
Target:  5'- cCCcGAC---CUGGCGGCCAcCCGCGa -3'
miRNA:   3'- -GGaCUGuaaGAUCGCUGGUcGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 184581 0.68 0.950939
Target:  5'- --cGGCGgc--GGCGGCCacgcgcGGCCGCGGg -3'
miRNA:   3'- ggaCUGUaagaUCGCUGG------UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 133801 0.68 0.942392
Target:  5'- gCUGuuGg---GGCGAUCGGCCGCGa -3'
miRNA:   3'- gGACugUaagaUCGCUGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 65221 0.68 0.932933
Target:  5'- gCUcGCAUUCcacgGGCGGCgGucGCCGCGGc -3'
miRNA:   3'- gGAcUGUAAGa---UCGCUGgU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 124003 0.68 0.937777
Target:  5'- aUCU-ACGUga-AGCGGgCGGCCGCGGa -3'
miRNA:   3'- -GGAcUGUAagaUCGCUgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 11519 0.68 0.937777
Target:  5'- aCgUGACGaUCgagcugcgGGCGACCgaGGaCCGCGGc -3'
miRNA:   3'- -GgACUGUaAGa-------UCGCUGG--UC-GGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 33105 0.68 0.937777
Target:  5'- --cGGCGUgaacGUGAgCGGCCGCGGg -3'
miRNA:   3'- ggaCUGUAagauCGCUgGUCGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.