miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 65221 0.68 0.932933
Target:  5'- gCUcGCAUUCcacgGGCGGCgGucGCCGCGGc -3'
miRNA:   3'- gGAcUGUAAGa---UCGCUGgU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 145581 0.68 0.946779
Target:  5'- gCC-GACGgagcGGCGGCCGGCuccCGCGGa -3'
miRNA:   3'- -GGaCUGUaagaUCGCUGGUCG---GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 192627 0.68 0.950939
Target:  5'- --gGACAgUCgGGCGGCCgcuccAGCCGCGc -3'
miRNA:   3'- ggaCUGUaAGaUCGCUGG-----UCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 11519 0.68 0.937777
Target:  5'- aCgUGACGaUCgagcugcgGGCGACCgaGGaCCGCGGc -3'
miRNA:   3'- -GgACUGUaAGa-------UCGCUGG--UC-GGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 184581 0.68 0.950939
Target:  5'- --cGGCGgc--GGCGGCCacgcgcGGCCGCGGg -3'
miRNA:   3'- ggaCUGUaagaUCGCUGG------UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 17940 0.68 0.950939
Target:  5'- cCCcGAC---CUGGCGGCCAcCCGCGa -3'
miRNA:   3'- -GGaCUGuaaGAUCGCUGGUcGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 87372 0.68 0.946779
Target:  5'- --cGGCGUUCUgGGCGGCgCGGCCagaGCGa -3'
miRNA:   3'- ggaCUGUAAGA-UCGCUG-GUCGG---CGCc -5'
11138 3' -54.2 NC_002794.1 + 120802 0.67 0.965387
Target:  5'- -gUGACGUUUUuggAGCGG-CAGCUGCGa -3'
miRNA:   3'- ggACUGUAAGA---UCGCUgGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 185449 0.67 0.968471
Target:  5'- --gGACAggUCUccGCGACaaacGCCGCGGg -3'
miRNA:   3'- ggaCUGUa-AGAu-CGCUGgu--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 32259 0.67 0.968471
Target:  5'- gCUGGCGcUCga-CGGCCGGCCGauCGGc -3'
miRNA:   3'- gGACUGUaAGaucGCUGGUCGGC--GCC- -5'
11138 3' -54.2 NC_002794.1 + 153920 0.67 0.968471
Target:  5'- aCC-GACAggUCc-GCGAUC-GCCGCGGa -3'
miRNA:   3'- -GGaCUGUa-AGauCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 34089 0.67 0.965387
Target:  5'- gCCgGGCAgccgUCgGGCGGcCCGGaCCGCGa -3'
miRNA:   3'- -GGaCUGUa---AGaUCGCU-GGUC-GGCGCc -5'
11138 3' -54.2 NC_002794.1 + 80043 0.67 0.965387
Target:  5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3'
miRNA:   3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 38445 0.67 0.965387
Target:  5'- gCCgGACugaggAGcCGGCgCGGCCGCGGc -3'
miRNA:   3'- -GGaCUGuaagaUC-GCUG-GUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 55784 0.67 0.954876
Target:  5'- gCUGGCGUuggccUCcAGCGagcgcagcGCCGGgCGCGGg -3'
miRNA:   3'- gGACUGUA-----AGaUCGC--------UGGUCgGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 150832 0.67 0.954876
Target:  5'- gCUGAUcgUCgucAGCu-CCAGCgGCGGc -3'
miRNA:   3'- gGACUGuaAGa--UCGcuGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 102389 0.67 0.958594
Target:  5'- --cGACGUgguggaacuggUCUuccGCGACgCGGCCGUGGc -3'
miRNA:   3'- ggaCUGUA-----------AGAu--CGCUG-GUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 99334 0.67 0.962096
Target:  5'- gCCUGGCAgaugcugCUGGCGAUCcGUCGguUGGa -3'
miRNA:   3'- -GGACUGUaa-----GAUCGCUGGuCGGC--GCC- -5'
11138 3' -54.2 NC_002794.1 + 21864 0.67 0.962096
Target:  5'- aUUGaACggUCc-GCGagGCCGGCCGCGGg -3'
miRNA:   3'- gGAC-UGuaAGauCGC--UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 84304 0.67 0.958594
Target:  5'- --cGGCGcUUcCUGGCGACCGGgCCGCc- -3'
miRNA:   3'- ggaCUGU-AA-GAUCGCUGGUC-GGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.