miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 70220 0.76 0.595082
Target:  5'- cCCgGACggUCgggcgGGCGGCCGGCCGCc- -3'
miRNA:   3'- -GGaCUGuaAGa----UCGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 99707 0.76 0.605114
Target:  5'- gCCgcgGAUGUUCUuucGCGACCGGCCGUa- -3'
miRNA:   3'- -GGa--CUGUAAGAu--CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 102052 0.75 0.645365
Target:  5'- uCCUcGCGcgcUUCUucgagccgGGCGACCuGCCGCGGg -3'
miRNA:   3'- -GGAcUGU---AAGA--------UCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 141603 0.75 0.655421
Target:  5'- gCCgGGCGgcucGGCGACCGGCuCGCGGu -3'
miRNA:   3'- -GGaCUGUaagaUCGCUGGUCG-GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 19234 0.73 0.763013
Target:  5'- aCCUGA---UCUgAGCcgaugaugugccGACCGGCCGCGGc -3'
miRNA:   3'- -GGACUguaAGA-UCG------------CUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 119895 0.72 0.772294
Target:  5'- aCUGGCGgaucUUGGCGGCCGacGCCGgGGa -3'
miRNA:   3'- gGACUGUaa--GAUCGCUGGU--CGGCgCC- -5'
11138 3' -54.2 NC_002794.1 + 156373 0.72 0.78779
Target:  5'- gUUGGCGUacacggggucuucuUCUagAGCGGCCGgcGCCGCGGc -3'
miRNA:   3'- gGACUGUA--------------AGA--UCGCUGGU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 187410 0.72 0.790485
Target:  5'- cCCUGcAgGUUCUcgAGCGucugcuggaagGCCAGCCGCGc -3'
miRNA:   3'- -GGAC-UgUAAGA--UCGC-----------UGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 16288 0.72 0.790485
Target:  5'- gUUGGCGgagUCUAGCcuGgCGGCCGCGGc -3'
miRNA:   3'- gGACUGUa--AGAUCGc-UgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 95072 0.71 0.816716
Target:  5'- aCCUGACcugUCUccAGUGcuacgaggaGCUGGCCGCGGu -3'
miRNA:   3'- -GGACUGua-AGA--UCGC---------UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 20535 0.71 0.816716
Target:  5'- aCUGGCGUUCgcgacgacgGGCGACCGGaucCCGCc- -3'
miRNA:   3'- gGACUGUAAGa--------UCGCUGGUC---GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 157660 0.71 0.841488
Target:  5'- uCCcGACGcgCUGGCGGCUugGGCCGCu- -3'
miRNA:   3'- -GGaCUGUaaGAUCGCUGG--UCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 91918 0.71 0.841488
Target:  5'- aCCUGGCcugggcCUGcGCGACCAGuCCGCa- -3'
miRNA:   3'- -GGACUGuaa---GAU-CGCUGGUC-GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 63203 0.71 0.849387
Target:  5'- gUCUGACcgUCgaccugcGCGACCuGCCGCc- -3'
miRNA:   3'- -GGACUGuaAGau-----CGCUGGuCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 126048 0.71 0.852493
Target:  5'- gCCUGGCGgucggaCUGGUcgcgcgccuggccugGACCGGCCuGCGGc -3'
miRNA:   3'- -GGACUGUaa----GAUCG---------------CUGGUCGG-CGCC- -5'
11138 3' -54.2 NC_002794.1 + 37485 0.71 0.857094
Target:  5'- cCCUG-CGgc---GCGACCAGCCGCa- -3'
miRNA:   3'- -GGACuGUaagauCGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 100738 0.7 0.864605
Target:  5'- gCUGACGcgCgcggAGCGcgucuaucgcugGCCGGUCGCGGa -3'
miRNA:   3'- gGACUGUaaGa---UCGC------------UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 42065 0.7 0.864605
Target:  5'- -aUGAUGU--UGGcCGACUGGCCGCGGg -3'
miRNA:   3'- ggACUGUAagAUC-GCUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 113853 0.7 0.871191
Target:  5'- gCCUGGCGUgcagUUccggccaGGCGcGCuCGGCCGCGGc -3'
miRNA:   3'- -GGACUGUAa---GA-------UCGC-UG-GUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 34977 0.7 0.881793
Target:  5'- cCCUGGCcacgaaacuGCG-CCGGCUGCGGg -3'
miRNA:   3'- -GGACUGuaagau---CGCuGGUCGGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.