Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11138 | 3' | -54.2 | NC_002794.1 | + | 76514 | 0.68 | 0.942392 |
Target: 5'- cCCcGACcccgUCccaGGCcACCGGCCGCGGc -3' miRNA: 3'- -GGaCUGua--AGa--UCGcUGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 70655 | 0.68 | 0.942392 |
Target: 5'- uCUUGGCc-UCgugcgcGGCGGCC-GCCGCGGc -3' miRNA: 3'- -GGACUGuaAGa-----UCGCUGGuCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 145581 | 0.68 | 0.946779 |
Target: 5'- gCC-GACGgagcGGCGGCCGGCuccCGCGGa -3' miRNA: 3'- -GGaCUGUaagaUCGCUGGUCG---GCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 87372 | 0.68 | 0.946779 |
Target: 5'- --cGGCGUUCUgGGCGGCgCGGCCagaGCGa -3' miRNA: 3'- ggaCUGUAAGA-UCGCUG-GUCGG---CGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 192627 | 0.68 | 0.950939 |
Target: 5'- --gGACAgUCgGGCGGCCgcuccAGCCGCGc -3' miRNA: 3'- ggaCUGUaAGaUCGCUGG-----UCGGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 17940 | 0.68 | 0.950939 |
Target: 5'- cCCcGAC---CUGGCGGCCAcCCGCGa -3' miRNA: 3'- -GGaCUGuaaGAUCGCUGGUcGGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 184581 | 0.68 | 0.950939 |
Target: 5'- --cGGCGgc--GGCGGCCacgcgcGGCCGCGGg -3' miRNA: 3'- ggaCUGUaagaUCGCUGG------UCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 150832 | 0.67 | 0.954876 |
Target: 5'- gCUGAUcgUCgucAGCu-CCAGCgGCGGc -3' miRNA: 3'- gGACUGuaAGa--UCGcuGGUCGgCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 55784 | 0.67 | 0.954876 |
Target: 5'- gCUGGCGUuggccUCcAGCGagcgcagcGCCGGgCGCGGg -3' miRNA: 3'- gGACUGUA-----AGaUCGC--------UGGUCgGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 84304 | 0.67 | 0.958594 |
Target: 5'- --cGGCGcUUcCUGGCGACCGGgCCGCc- -3' miRNA: 3'- ggaCUGU-AA-GAUCGCUGGUC-GGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 102389 | 0.67 | 0.958594 |
Target: 5'- --cGACGUgguggaacuggUCUuccGCGACgCGGCCGUGGc -3' miRNA: 3'- ggaCUGUA-----------AGAu--CGCUG-GUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 21864 | 0.67 | 0.962096 |
Target: 5'- aUUGaACggUCc-GCGagGCCGGCCGCGGg -3' miRNA: 3'- gGAC-UGuaAGauCGC--UGGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 99334 | 0.67 | 0.962096 |
Target: 5'- gCCUGGCAgaugcugCUGGCGAUCcGUCGguUGGa -3' miRNA: 3'- -GGACUGUaa-----GAUCGCUGGuCGGC--GCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 34089 | 0.67 | 0.965387 |
Target: 5'- gCCgGGCAgccgUCgGGCGGcCCGGaCCGCGa -3' miRNA: 3'- -GGaCUGUa---AGaUCGCU-GGUC-GGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 80043 | 0.67 | 0.965387 |
Target: 5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3' miRNA: 3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 38445 | 0.67 | 0.965387 |
Target: 5'- gCCgGACugaggAGcCGGCgCGGCCGCGGc -3' miRNA: 3'- -GGaCUGuaagaUC-GCUG-GUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 120802 | 0.67 | 0.965387 |
Target: 5'- -gUGACGUUUUuggAGCGG-CAGCUGCGa -3' miRNA: 3'- ggACUGUAAGA---UCGCUgGUCGGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 78665 | 0.67 | 0.965387 |
Target: 5'- uUCUGGCAcUCcaccucGGCcGCCGGCCGCa- -3' miRNA: 3'- -GGACUGUaAGa-----UCGcUGGUCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 185449 | 0.67 | 0.968471 |
Target: 5'- --gGACAggUCUccGCGACaaacGCCGCGGg -3' miRNA: 3'- ggaCUGUa-AGAu-CGCUGgu--CGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 32259 | 0.67 | 0.968471 |
Target: 5'- gCUGGCGcUCga-CGGCCGGCCGauCGGc -3' miRNA: 3'- gGACUGUaAGaucGCUGGUCGGC--GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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