miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 1281 0.66 0.974044
Target:  5'- aCC-GGCcUUCUAagGACCGGCCGCuGGc -3'
miRNA:   3'- -GGaCUGuAAGAUcgCUGGUCGGCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 4045 0.66 0.98101
Target:  5'- aCC-GGCAUcaugAGCGACCc-CCGCGGc -3'
miRNA:   3'- -GGaCUGUAaga-UCGCUGGucGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 8865 0.66 0.982988
Target:  5'- cCCUGcgaGUUCcucaCGGCCAGCCGCc- -3'
miRNA:   3'- -GGACug-UAAGauc-GCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 11519 0.68 0.937777
Target:  5'- aCgUGACGaUCgagcugcgGGCGACCgaGGaCCGCGGc -3'
miRNA:   3'- -GgACUGUaAGa-------UCGCUGG--UC-GGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 12494 0.69 0.917011
Target:  5'- aCCUGcACGUUCccgAGCcgcucGACCGGCgGCuGGg -3'
miRNA:   3'- -GGAC-UGUAAGa--UCG-----CUGGUCGgCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 14036 0.69 0.917011
Target:  5'- aCUGGCug-CUGGCGAUCcuuacGCCGaCGGc -3'
miRNA:   3'- gGACUGuaaGAUCGCUGGu----CGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 16288 0.72 0.790485
Target:  5'- gUUGGCGgagUCUAGCcuGgCGGCCGCGGc -3'
miRNA:   3'- gGACUGUa--AGAUCGc-UgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 17940 0.68 0.950939
Target:  5'- cCCcGAC---CUGGCGGCCAcCCGCGa -3'
miRNA:   3'- -GGaCUGuaaGAUCGCUGGUcGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 19234 0.73 0.763013
Target:  5'- aCCUGA---UCUgAGCcgaugaugugccGACCGGCCGCGGc -3'
miRNA:   3'- -GGACUguaAGA-UCG------------CUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 20535 0.71 0.816716
Target:  5'- aCUGGCGUUCgcgacgacgGGCGACCGGaucCCGCc- -3'
miRNA:   3'- gGACUGUAAGa--------UCGCUGGUC---GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 21864 0.67 0.962096
Target:  5'- aUUGaACggUCc-GCGagGCCGGCCGCGGg -3'
miRNA:   3'- gGAC-UGuaAGauCGC--UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 23925 0.66 0.976303
Target:  5'- --gGGCGagCgAGCGAuccgagcCCGGCCGCGGc -3'
miRNA:   3'- ggaCUGUaaGaUCGCU-------GGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 29916 0.66 0.971355
Target:  5'- aCCgacGACGggC-AGCGACgAGCCGCc- -3'
miRNA:   3'- -GGa--CUGUaaGaUCGCUGgUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 30370 0.66 0.974044
Target:  5'- cCCUGGCuc-UUGGCGAUCgucauGGCCGCc- -3'
miRNA:   3'- -GGACUGuaaGAUCGCUGG-----UCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 32259 0.67 0.968471
Target:  5'- gCUGGCGcUCga-CGGCCGGCCGauCGGc -3'
miRNA:   3'- gGACUGUaAGaucGCUGGUCGGC--GCC- -5'
11138 3' -54.2 NC_002794.1 + 33105 0.68 0.937777
Target:  5'- --cGGCGUgaacGUGAgCGGCCGCGGg -3'
miRNA:   3'- ggaCUGUAagauCGCUgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 34089 0.67 0.965387
Target:  5'- gCCgGGCAgccgUCgGGCGGcCCGGaCCGCGa -3'
miRNA:   3'- -GGaCUGUa---AGaUCGCU-GGUC-GGCGCc -5'
11138 3' -54.2 NC_002794.1 + 34977 0.7 0.881793
Target:  5'- cCCUGGCcacgaaacuGCG-CCGGCUGCGGg -3'
miRNA:   3'- -GGACUGuaagau---CGCuGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 37485 0.71 0.857094
Target:  5'- cCCUG-CGgc---GCGACCAGCCGCa- -3'
miRNA:   3'- -GGACuGUaagauCGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 38445 0.67 0.965387
Target:  5'- gCCgGACugaggAGcCGGCgCGGCCGCGGc -3'
miRNA:   3'- -GGaCUGuaagaUC-GCUG-GUCGGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.