miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 42065 0.7 0.864605
Target:  5'- -aUGAUGU--UGGcCGACUGGCCGCGGg -3'
miRNA:   3'- ggACUGUAagAUC-GCUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 44242 0.66 0.971355
Target:  5'- gCCgGGCGgcUCggugccgGGCGGCuCGGCCGcCGGg -3'
miRNA:   3'- -GGaCUGUa-AGa------UCGCUG-GUCGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 48346 0.66 0.974044
Target:  5'- cCCgGugGUacgcCUGcuccGCGACCAGCCGCc- -3'
miRNA:   3'- -GGaCugUAa---GAU----CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 55784 0.67 0.954876
Target:  5'- gCUGGCGUuggccUCcAGCGagcgcagcGCCGGgCGCGGg -3'
miRNA:   3'- gGACUGUA-----AGaUCGC--------UGGUCgGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 56320 0.66 0.982988
Target:  5'- gCUGGCGgcc--GUGGCCGGCgaCGCGGc -3'
miRNA:   3'- gGACUGUaagauCGCUGGUCG--GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 61517 0.66 0.974044
Target:  5'- gCCgGACGgcggccgCcGGCGGCC-GCCGCGa -3'
miRNA:   3'- -GGaCUGUaa-----GaUCGCUGGuCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 63203 0.71 0.849387
Target:  5'- gUCUGACcgUCgaccugcGCGACCuGCCGCc- -3'
miRNA:   3'- -GGACUGuaAGau-----CGCUGGuCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 65221 0.68 0.932933
Target:  5'- gCUcGCAUUCcacgGGCGGCgGucGCCGCGGc -3'
miRNA:   3'- gGAcUGUAAGa---UCGCUGgU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 68541 0.66 0.971355
Target:  5'- aCCUGAUc-----GCGGCCgacaAGCUGCGGg -3'
miRNA:   3'- -GGACUGuaagauCGCUGG----UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 70220 0.76 0.595082
Target:  5'- cCCgGACggUCgggcgGGCGGCCGGCCGCc- -3'
miRNA:   3'- -GGaCUGuaAGa----UCGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 70655 0.68 0.942392
Target:  5'- uCUUGGCc-UCgugcgcGGCGGCC-GCCGCGGc -3'
miRNA:   3'- -GGACUGuaAGa-----UCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 71225 0.66 0.978865
Target:  5'- cCCggccGCGUagUGGCGGCCGG-CGUGGa -3'
miRNA:   3'- -GGac--UGUAagAUCGCUGGUCgGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 75350 0.66 0.976545
Target:  5'- aCCggcGACgGUUCgccacCGACCcGCCGCGGc -3'
miRNA:   3'- -GGa--CUG-UAAGauc--GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 76514 0.68 0.942392
Target:  5'- cCCcGACcccgUCccaGGCcACCGGCCGCGGc -3'
miRNA:   3'- -GGaCUGua--AGa--UCGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 78665 0.67 0.965387
Target:  5'- uUCUGGCAcUCcaccucGGCcGCCGGCCGCa- -3'
miRNA:   3'- -GGACUGUaAGa-----UCGcUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 79432 0.68 0.942392
Target:  5'- gCCcGGCGgcggCggcGGCGACCGGC-GCGGa -3'
miRNA:   3'- -GGaCUGUaa--Ga--UCGCUGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 80043 0.67 0.965387
Target:  5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3'
miRNA:   3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 83755 0.66 0.980803
Target:  5'- cCCUGGCGUUCUGcccguacGaCGACgAcGCCGCc- -3'
miRNA:   3'- -GGACUGUAAGAU-------C-GCUGgU-CGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 84304 0.67 0.958594
Target:  5'- --cGGCGcUUcCUGGCGACCGGgCCGCc- -3'
miRNA:   3'- ggaCUGU-AA-GAUCGCUGGUC-GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 87372 0.68 0.946779
Target:  5'- --cGGCGUUCUgGGCGGCgCGGCCagaGCGa -3'
miRNA:   3'- ggaCUGUAAGA-UCGCUG-GUCGG---CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.