miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 192627 0.68 0.950939
Target:  5'- --gGACAgUCgGGCGGCCgcuccAGCCGCGc -3'
miRNA:   3'- ggaCUGUaAGaUCGCUGG-----UCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 191999 0.69 0.927857
Target:  5'- gCCggGACGg--UAGCGGCgguGGCCGCGGc -3'
miRNA:   3'- -GGa-CUGUaagAUCGCUGg--UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 189757 0.69 0.927857
Target:  5'- --cGGCAcUCgguuucGGUGcaccGCCAGCCGCGGg -3'
miRNA:   3'- ggaCUGUaAGa-----UCGC----UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 189647 0.69 0.927857
Target:  5'- gCUGGCugaCUAGcCGGCUGGCCgaGCGGu -3'
miRNA:   3'- gGACUGuaaGAUC-GCUGGUCGG--CGCC- -5'
11138 3' -54.2 NC_002794.1 + 187410 0.72 0.790485
Target:  5'- cCCUGcAgGUUCUcgAGCGucugcuggaagGCCAGCCGCGc -3'
miRNA:   3'- -GGAC-UgUAAGA--UCGC-----------UGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 186277 0.69 0.896466
Target:  5'- gCCUGGCGcggCggcaccgcggccaGGCGGCCGgucGCCGCGGc -3'
miRNA:   3'- -GGACUGUaa-Ga------------UCGCUGGU---CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 185449 0.67 0.968471
Target:  5'- --gGACAggUCUccGCGACaaacGCCGCGGg -3'
miRNA:   3'- ggaCUGUa-AGAu-CGCUGgu--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 184581 0.68 0.950939
Target:  5'- --cGGCGgc--GGCGGCCacgcgcGGCCGCGGg -3'
miRNA:   3'- ggaCUGUaagaUCGCUGG------UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 157660 0.71 0.841488
Target:  5'- uCCcGACGcgCUGGCGGCUugGGCCGCu- -3'
miRNA:   3'- -GGaCUGUaaGAUCGCUGG--UCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 156373 0.72 0.78779
Target:  5'- gUUGGCGUacacggggucuucuUCUagAGCGGCCGgcGCCGCGGc -3'
miRNA:   3'- gGACUGUA--------------AGA--UCGCUGGU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 153920 0.67 0.968471
Target:  5'- aCC-GACAggUCc-GCGAUC-GCCGCGGa -3'
miRNA:   3'- -GGaCUGUa-AGauCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 150832 0.67 0.954876
Target:  5'- gCUGAUcgUCgucAGCu-CCAGCgGCGGc -3'
miRNA:   3'- gGACUGuaAGa--UCGcuGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 149962 0.69 0.922549
Target:  5'- --gGACGU---GGcCGACCuGCCGCGGa -3'
miRNA:   3'- ggaCUGUAagaUC-GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 149676 0.66 0.976545
Target:  5'- --gGGCGcgUCgcGCucGACUGGCCGCGGg -3'
miRNA:   3'- ggaCUGUa-AGauCG--CUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 146726 0.66 0.974044
Target:  5'- gCUGGaucucgaucUCUGaCGACgGGCCGCGGa -3'
miRNA:   3'- gGACUgua------AGAUcGCUGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 145581 0.68 0.946779
Target:  5'- gCC-GACGgagcGGCGGCCGGCuccCGCGGa -3'
miRNA:   3'- -GGaCUGUaagaUCGCUGGUCG---GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 143479 0.69 0.927857
Target:  5'- gCUGGCAgaCgauGUcGCUGGCCGCGGg -3'
miRNA:   3'- gGACUGUaaGau-CGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 141603 0.75 0.655421
Target:  5'- gCCgGGCGgcucGGCGACCGGCuCGCGGu -3'
miRNA:   3'- -GGaCUGUaagaUCGCUGGUCG-GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 140891 0.66 0.982988
Target:  5'- uCCUGACc--CUGuCGACCGcGUgGCGGg -3'
miRNA:   3'- -GGACUGuaaGAUcGCUGGU-CGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 138171 0.69 0.898384
Target:  5'- uUUGACGcUCUugaccucGGCGGCCAGCCGg-- -3'
miRNA:   3'- gGACUGUaAGA-------UCGCUGGUCGGCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.