miRNA display CGI


Results 21 - 40 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 133801 0.68 0.942392
Target:  5'- gCUGuuGg---GGCGAUCGGCCGCGa -3'
miRNA:   3'- gGACugUaagaUCGCUGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 126048 0.71 0.852493
Target:  5'- gCCUGGCGgucggaCUGGUcgcgcgccuggccugGACCGGCCuGCGGc -3'
miRNA:   3'- -GGACUGUaa----GAUCG---------------CUGGUCGG-CGCC- -5'
11138 3' -54.2 NC_002794.1 + 124796 0.66 0.978188
Target:  5'- aCCUGACcaaGUUCUAcgugcaggacacguGCGACCuGUCgGCGa -3'
miRNA:   3'- -GGACUG---UAAGAU--------------CGCUGGuCGG-CGCc -5'
11138 3' -54.2 NC_002794.1 + 124003 0.68 0.937777
Target:  5'- aUCU-ACGUga-AGCGGgCGGCCGCGGa -3'
miRNA:   3'- -GGAcUGUAagaUCGCUgGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 123440 0.66 0.978865
Target:  5'- -gUGACcgUCgccgAGCGGCUGGCCGa-- -3'
miRNA:   3'- ggACUGuaAGa---UCGCUGGUCGGCgcc -5'
11138 3' -54.2 NC_002794.1 + 120802 0.67 0.965387
Target:  5'- -gUGACGUUUUuggAGCGG-CAGCUGCGa -3'
miRNA:   3'- ggACUGUAAGA---UCGCUgGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 119895 0.72 0.772294
Target:  5'- aCUGGCGgaucUUGGCGGCCGacGCCGgGGa -3'
miRNA:   3'- gGACUGUaa--GAUCGCUGGU--CGGCgCC- -5'
11138 3' -54.2 NC_002794.1 + 119500 0.69 0.911242
Target:  5'- uCCUcGGgGUcgUCggcGGCGcggaGCCGGCCGCGGa -3'
miRNA:   3'- -GGA-CUgUA--AGa--UCGC----UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 113853 0.7 0.871191
Target:  5'- gCCUGGCGUgcagUUccggccaGGCGcGCuCGGCCGCGGc -3'
miRNA:   3'- -GGACUGUAa---GA-------UCGC-UG-GUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 113487 0.66 0.974044
Target:  5'- cUCUG-CAggagcUCgcgcGCGGCCgagAGCCGCGGa -3'
miRNA:   3'- -GGACuGUa----AGau--CGCUGG---UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 111113 0.66 0.98101
Target:  5'- aCCgUGGCcgUCgacggcgccGGCGGCCGGUgcuccaCGCGGu -3'
miRNA:   3'- -GG-ACUGuaAGa--------UCGCUGGUCG------GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 109155 0.66 0.982988
Target:  5'- --aGGCGggggagaUGGCGACgAGCgGCGGu -3'
miRNA:   3'- ggaCUGUaag----AUCGCUGgUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 105950 0.69 0.911242
Target:  5'- gCUGuACGaacggCUGGgGGCC-GCCGCGGa -3'
miRNA:   3'- gGAC-UGUaa---GAUCgCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 104878 0.66 0.98101
Target:  5'- --aGGCGcgUgaAGCgGGCCGGCCGCGa -3'
miRNA:   3'- ggaCUGUa-AgaUCG-CUGGUCGGCGCc -5'
11138 3' -54.2 NC_002794.1 + 102389 0.67 0.958594
Target:  5'- --cGACGUgguggaacuggUCUuccGCGACgCGGCCGUGGc -3'
miRNA:   3'- ggaCUGUA-----------AGAu--CGCUG-GUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 102052 0.75 0.645365
Target:  5'- uCCUcGCGcgcUUCUucgagccgGGCGACCuGCCGCGGg -3'
miRNA:   3'- -GGAcUGU---AAGA--------UCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 100738 0.7 0.864605
Target:  5'- gCUGACGcgCgcggAGCGcgucuaucgcugGCCGGUCGCGGa -3'
miRNA:   3'- gGACUGUaaGa---UCGC------------UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 99707 0.76 0.605114
Target:  5'- gCCgcgGAUGUUCUuucGCGACCGGCCGUa- -3'
miRNA:   3'- -GGa--CUGUAAGAu--CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 99334 0.67 0.962096
Target:  5'- gCCUGGCAgaugcugCUGGCGAUCcGUCGguUGGa -3'
miRNA:   3'- -GGACUGUaa-----GAUCGCUGGuCGGC--GCC- -5'
11138 3' -54.2 NC_002794.1 + 98338 0.7 0.8859
Target:  5'- gCUGACGgccaUCUA-CGACCGGCCgaucgccgcGCGGc -3'
miRNA:   3'- gGACUGUa---AGAUcGCUGGUCGG---------CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.