miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 95072 0.71 0.816716
Target:  5'- aCCUGACcugUCUccAGUGcuacgaggaGCUGGCCGCGGu -3'
miRNA:   3'- -GGACUGua-AGA--UCGC---------UGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 94873 0.66 0.98101
Target:  5'- -gUGACGUUUacggAGCGGauCCGGCUGaCGGu -3'
miRNA:   3'- ggACUGUAAGa---UCGCU--GGUCGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 93980 0.7 0.89257
Target:  5'- cCCUGACcgcgCUcGGCGcggacgccggcGCCGGCgGCGGg -3'
miRNA:   3'- -GGACUGuaa-GA-UCGC-----------UGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 91918 0.71 0.841488
Target:  5'- aCCUGGCcugggcCUGcGCGACCAGuCCGCa- -3'
miRNA:   3'- -GGACUGuaa---GAU-CGCUGGUC-GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 90855 0.68 0.937777
Target:  5'- gCUGACGaaagucacUUCcauGUGGCCGGCCGCc- -3'
miRNA:   3'- gGACUGU--------AAGau-CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 87372 0.68 0.946779
Target:  5'- --cGGCGUUCUgGGCGGCgCGGCCagaGCGa -3'
miRNA:   3'- ggaCUGUAAGA-UCGCUG-GUCGG---CGCc -5'
11138 3' -54.2 NC_002794.1 + 84304 0.67 0.958594
Target:  5'- --cGGCGcUUcCUGGCGACCGGgCCGCc- -3'
miRNA:   3'- ggaCUGU-AA-GAUCGCUGGUC-GGCGcc -5'
11138 3' -54.2 NC_002794.1 + 83755 0.66 0.980803
Target:  5'- cCCUGGCGUUCUGcccguacGaCGACgAcGCCGCc- -3'
miRNA:   3'- -GGACUGUAAGAU-------C-GCUGgU-CGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 80043 0.67 0.965387
Target:  5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3'
miRNA:   3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 79432 0.68 0.942392
Target:  5'- gCCcGGCGgcggCggcGGCGACCGGC-GCGGa -3'
miRNA:   3'- -GGaCUGUaa--Ga--UCGCUGGUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 78665 0.67 0.965387
Target:  5'- uUCUGGCAcUCcaccucGGCcGCCGGCCGCa- -3'
miRNA:   3'- -GGACUGUaAGa-----UCGcUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 76514 0.68 0.942392
Target:  5'- cCCcGACcccgUCccaGGCcACCGGCCGCGGc -3'
miRNA:   3'- -GGaCUGua--AGa--UCGcUGGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 75350 0.66 0.976545
Target:  5'- aCCggcGACgGUUCgccacCGACCcGCCGCGGc -3'
miRNA:   3'- -GGa--CUG-UAAGauc--GCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 71225 0.66 0.978865
Target:  5'- cCCggccGCGUagUGGCGGCCGG-CGUGGa -3'
miRNA:   3'- -GGac--UGUAagAUCGCUGGUCgGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 70655 0.68 0.942392
Target:  5'- uCUUGGCc-UCgugcgcGGCGGCC-GCCGCGGc -3'
miRNA:   3'- -GGACUGuaAGa-----UCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 70220 0.76 0.595082
Target:  5'- cCCgGACggUCgggcgGGCGGCCGGCCGCc- -3'
miRNA:   3'- -GGaCUGuaAGa----UCGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 68541 0.66 0.971355
Target:  5'- aCCUGAUc-----GCGGCCgacaAGCUGCGGg -3'
miRNA:   3'- -GGACUGuaagauCGCUGG----UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 65221 0.68 0.932933
Target:  5'- gCUcGCAUUCcacgGGCGGCgGucGCCGCGGc -3'
miRNA:   3'- gGAcUGUAAGa---UCGCUGgU--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 63203 0.71 0.849387
Target:  5'- gUCUGACcgUCgaccugcGCGACCuGCCGCc- -3'
miRNA:   3'- -GGACUGuaAGau-----CGCUGGuCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 61517 0.66 0.974044
Target:  5'- gCCgGACGgcggccgCcGGCGGCC-GCCGCGa -3'
miRNA:   3'- -GGaCUGUaa-----GaUCGCUGGuCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.