Results 41 - 60 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11138 | 3' | -54.2 | NC_002794.1 | + | 111113 | 0.66 | 0.98101 |
Target: 5'- aCCgUGGCcgUCgacggcgccGGCGGCCGGUgcuccaCGCGGu -3' miRNA: 3'- -GG-ACUGuaAGa--------UCGCUGGUCG------GCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 94873 | 0.66 | 0.98101 |
Target: 5'- -gUGACGUUUacggAGCGGauCCGGCUGaCGGu -3' miRNA: 3'- ggACUGUAAGa---UCGCU--GGUCGGC-GCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 56320 | 0.66 | 0.982988 |
Target: 5'- gCUGGCGgcc--GUGGCCGGCgaCGCGGc -3' miRNA: 3'- gGACUGUaagauCGCUGGUCG--GCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 109155 | 0.66 | 0.982988 |
Target: 5'- --aGGCGggggagaUGGCGACgAGCgGCGGu -3' miRNA: 3'- ggaCUGUaag----AUCGCUGgUCGgCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 140891 | 0.66 | 0.982988 |
Target: 5'- uCCUGACc--CUGuCGACCGcGUgGCGGg -3' miRNA: 3'- -GGACUGuaaGAUcGCUGGU-CGgCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 146726 | 0.66 | 0.974044 |
Target: 5'- gCUGGaucucgaucUCUGaCGACgGGCCGCGGa -3' miRNA: 3'- gGACUgua------AGAUcGCUGgUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 23925 | 0.66 | 0.976303 |
Target: 5'- --gGGCGagCgAGCGAuccgagcCCGGCCGCGGc -3' miRNA: 3'- ggaCUGUaaGaUCGCU-------GGUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 80043 | 0.67 | 0.965387 |
Target: 5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3' miRNA: 3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 34089 | 0.67 | 0.965387 |
Target: 5'- gCCgGGCAgccgUCgGGCGGcCCGGaCCGCGa -3' miRNA: 3'- -GGaCUGUa---AGaUCGCU-GGUC-GGCGCc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 185449 | 0.67 | 0.968471 |
Target: 5'- --gGACAggUCUccGCGACaaacGCCGCGGg -3' miRNA: 3'- ggaCUGUa-AGAu-CGCUGgu--CGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 32259 | 0.67 | 0.968471 |
Target: 5'- gCUGGCGcUCga-CGGCCGGCCGauCGGc -3' miRNA: 3'- gGACUGUaAGaucGCUGGUCGGC--GCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 44242 | 0.66 | 0.971355 |
Target: 5'- gCCgGGCGgcUCggugccgGGCGGCuCGGCCGcCGGg -3' miRNA: 3'- -GGaCUGUa-AGa------UCGCUG-GUCGGC-GCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 153920 | 0.67 | 0.968471 |
Target: 5'- aCC-GACAggUCc-GCGAUC-GCCGCGGa -3' miRNA: 3'- -GGaCUGUa-AGauCGCUGGuCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 68541 | 0.66 | 0.971355 |
Target: 5'- aCCUGAUc-----GCGGCCgacaAGCUGCGGg -3' miRNA: 3'- -GGACUGuaagauCGCUGG----UCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 29916 | 0.66 | 0.971355 |
Target: 5'- aCCgacGACGggC-AGCGACgAGCCGCc- -3' miRNA: 3'- -GGa--CUGUaaGaUCGCUGgUCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 113487 | 0.66 | 0.974044 |
Target: 5'- cUCUG-CAggagcUCgcgcGCGGCCgagAGCCGCGGa -3' miRNA: 3'- -GGACuGUa----AGau--CGCUGG---UCGGCGCC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 30370 | 0.66 | 0.974044 |
Target: 5'- cCCUGGCuc-UUGGCGAUCgucauGGCCGCc- -3' miRNA: 3'- -GGACUGuaaGAUCGCUGG-----UCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 48346 | 0.66 | 0.974044 |
Target: 5'- cCCgGugGUacgcCUGcuccGCGACCAGCCGCc- -3' miRNA: 3'- -GGaCugUAa---GAU----CGCUGGUCGGCGcc -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 1281 | 0.66 | 0.974044 |
Target: 5'- aCC-GGCcUUCUAagGACCGGCCGCuGGc -3' miRNA: 3'- -GGaCUGuAAGAUcgCUGGUCGGCG-CC- -5' |
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11138 | 3' | -54.2 | NC_002794.1 | + | 61517 | 0.66 | 0.974044 |
Target: 5'- gCCgGACGgcggccgCcGGCGGCC-GCCGCGa -3' miRNA: 3'- -GGaCUGUaa-----GaUCGCUGGuCGGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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