miRNA display CGI


Results 41 - 60 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 3' -54.2 NC_002794.1 + 111113 0.66 0.98101
Target:  5'- aCCgUGGCcgUCgacggcgccGGCGGCCGGUgcuccaCGCGGu -3'
miRNA:   3'- -GG-ACUGuaAGa--------UCGCUGGUCG------GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 94873 0.66 0.98101
Target:  5'- -gUGACGUUUacggAGCGGauCCGGCUGaCGGu -3'
miRNA:   3'- ggACUGUAAGa---UCGCU--GGUCGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 56320 0.66 0.982988
Target:  5'- gCUGGCGgcc--GUGGCCGGCgaCGCGGc -3'
miRNA:   3'- gGACUGUaagauCGCUGGUCG--GCGCC- -5'
11138 3' -54.2 NC_002794.1 + 109155 0.66 0.982988
Target:  5'- --aGGCGggggagaUGGCGACgAGCgGCGGu -3'
miRNA:   3'- ggaCUGUaag----AUCGCUGgUCGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 140891 0.66 0.982988
Target:  5'- uCCUGACc--CUGuCGACCGcGUgGCGGg -3'
miRNA:   3'- -GGACUGuaaGAUcGCUGGU-CGgCGCC- -5'
11138 3' -54.2 NC_002794.1 + 146726 0.66 0.974044
Target:  5'- gCUGGaucucgaucUCUGaCGACgGGCCGCGGa -3'
miRNA:   3'- gGACUgua------AGAUcGCUGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 23925 0.66 0.976303
Target:  5'- --gGGCGagCgAGCGAuccgagcCCGGCCGCGGc -3'
miRNA:   3'- ggaCUGUaaGaUCGCU-------GGUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 80043 0.67 0.965387
Target:  5'- gCC-GACAgugCcGGCG-CgAGCCGCGGu -3'
miRNA:   3'- -GGaCUGUaa-GaUCGCuGgUCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 34089 0.67 0.965387
Target:  5'- gCCgGGCAgccgUCgGGCGGcCCGGaCCGCGa -3'
miRNA:   3'- -GGaCUGUa---AGaUCGCU-GGUC-GGCGCc -5'
11138 3' -54.2 NC_002794.1 + 185449 0.67 0.968471
Target:  5'- --gGACAggUCUccGCGACaaacGCCGCGGg -3'
miRNA:   3'- ggaCUGUa-AGAu-CGCUGgu--CGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 32259 0.67 0.968471
Target:  5'- gCUGGCGcUCga-CGGCCGGCCGauCGGc -3'
miRNA:   3'- gGACUGUaAGaucGCUGGUCGGC--GCC- -5'
11138 3' -54.2 NC_002794.1 + 44242 0.66 0.971355
Target:  5'- gCCgGGCGgcUCggugccgGGCGGCuCGGCCGcCGGg -3'
miRNA:   3'- -GGaCUGUa-AGa------UCGCUG-GUCGGC-GCC- -5'
11138 3' -54.2 NC_002794.1 + 153920 0.67 0.968471
Target:  5'- aCC-GACAggUCc-GCGAUC-GCCGCGGa -3'
miRNA:   3'- -GGaCUGUa-AGauCGCUGGuCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 68541 0.66 0.971355
Target:  5'- aCCUGAUc-----GCGGCCgacaAGCUGCGGg -3'
miRNA:   3'- -GGACUGuaagauCGCUGG----UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 29916 0.66 0.971355
Target:  5'- aCCgacGACGggC-AGCGACgAGCCGCc- -3'
miRNA:   3'- -GGa--CUGUaaGaUCGCUGgUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 113487 0.66 0.974044
Target:  5'- cUCUG-CAggagcUCgcgcGCGGCCgagAGCCGCGGa -3'
miRNA:   3'- -GGACuGUa----AGau--CGCUGG---UCGGCGCC- -5'
11138 3' -54.2 NC_002794.1 + 30370 0.66 0.974044
Target:  5'- cCCUGGCuc-UUGGCGAUCgucauGGCCGCc- -3'
miRNA:   3'- -GGACUGuaaGAUCGCUGG-----UCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 48346 0.66 0.974044
Target:  5'- cCCgGugGUacgcCUGcuccGCGACCAGCCGCc- -3'
miRNA:   3'- -GGaCugUAa---GAU----CGCUGGUCGGCGcc -5'
11138 3' -54.2 NC_002794.1 + 1281 0.66 0.974044
Target:  5'- aCC-GGCcUUCUAagGACCGGCCGCuGGc -3'
miRNA:   3'- -GGaCUGuAAGAUcgCUGGUCGGCG-CC- -5'
11138 3' -54.2 NC_002794.1 + 61517 0.66 0.974044
Target:  5'- gCCgGACGgcggccgCcGGCGGCC-GCCGCGa -3'
miRNA:   3'- -GGaCUGUaa-----GaUCGCUGGuCGGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.