miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 5' -54.6 NC_002794.1 + 190932 0.66 0.970292
Target:  5'- gGCCCGCAGC-CGGUag-CACGg---- -3'
miRNA:   3'- -CGGGCGUCGaGCUAgcaGUGCaagua -5'
11138 5' -54.6 NC_002794.1 + 193058 0.66 0.970292
Target:  5'- cGCCCGCaccGGCUgCGGgcCGUCGCGggaCAg -3'
miRNA:   3'- -CGGGCG---UCGA-GCUa-GCAGUGCaa-GUa -5'
11138 5' -54.6 NC_002794.1 + 178543 0.66 0.970292
Target:  5'- uCCCGCuGC-CGAUCGggcacCACGUcuUCAc -3'
miRNA:   3'- cGGGCGuCGaGCUAGCa----GUGCA--AGUa -5'
11138 5' -54.6 NC_002794.1 + 36377 0.66 0.968522
Target:  5'- cGCCCGCGGCgaagCGGUCGacccagaaaucgacCGCGUa--- -3'
miRNA:   3'- -CGGGCGUCGa---GCUAGCa-------------GUGCAagua -5'
11138 5' -54.6 NC_002794.1 + 119796 0.66 0.9673
Target:  5'- gGUCCGCcGaCUUGAgCGUCGCGUggcUCAg -3'
miRNA:   3'- -CGGGCGuC-GAGCUaGCAGUGCA---AGUa -5'
11138 5' -54.6 NC_002794.1 + 92331 0.66 0.9673
Target:  5'- gGCCCgggcggGCGGCUCGG-CGUCaACG-UCGa -3'
miRNA:   3'- -CGGG------CGUCGAGCUaGCAG-UGCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 183067 0.66 0.965406
Target:  5'- cGCUCGC-GCUggacgggaacgagagCGAggUCGUCACGUUCc- -3'
miRNA:   3'- -CGGGCGuCGA---------------GCU--AGCAGUGCAAGua -5'
11138 5' -54.6 NC_002794.1 + 185172 0.66 0.964101
Target:  5'- cGCCggCGCGGCgCGGUCGgCGCGgUCGg -3'
miRNA:   3'- -CGG--GCGUCGaGCUAGCaGUGCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 82816 0.66 0.964101
Target:  5'- aCCCGCGGCUCGcUCGagagacgCACGg---- -3'
miRNA:   3'- cGGGCGUCGAGCuAGCa------GUGCaagua -5'
11138 5' -54.6 NC_002794.1 + 142801 0.66 0.964101
Target:  5'- -gCCGCAGUUCGGccgggucggccUCGUucaacgcgugCGCGUUCAg -3'
miRNA:   3'- cgGGCGUCGAGCU-----------AGCA----------GUGCAAGUa -5'
11138 5' -54.6 NC_002794.1 + 15017 0.66 0.964101
Target:  5'- gGCUgGCuGCUCG-UCGUCACcuuccuggugcuGUUCAUc -3'
miRNA:   3'- -CGGgCGuCGAGCuAGCAGUG------------CAAGUA- -5'
11138 5' -54.6 NC_002794.1 + 49024 0.66 0.96069
Target:  5'- cGgCCGCGGCgucguccggcgCGGUCGUCAgCGUcCAg -3'
miRNA:   3'- -CgGGCGUCGa----------GCUAGCAGU-GCAaGUa -5'
11138 5' -54.6 NC_002794.1 + 78459 0.66 0.96069
Target:  5'- cGCUCGCGGuCUCGGUCaUCAgGcgCAc -3'
miRNA:   3'- -CGGGCGUC-GAGCUAGcAGUgCaaGUa -5'
11138 5' -54.6 NC_002794.1 + 124570 0.66 0.96069
Target:  5'- cGCCauccaGCAgcugcGCUCGAUCGUgCGCGUg--- -3'
miRNA:   3'- -CGGg----CGU-----CGAGCUAGCA-GUGCAagua -5'
11138 5' -54.6 NC_002794.1 + 187914 0.66 0.957061
Target:  5'- cGCCCGCcgGGCcccgccgCGAcCGUCGCG-UCAc -3'
miRNA:   3'- -CGGGCG--UCGa------GCUaGCAGUGCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 157126 0.66 0.957061
Target:  5'- cGUCCaaGUGGUgaaacacgcCGGUCGUCGCGUUCGUc -3'
miRNA:   3'- -CGGG--CGUCGa--------GCUAGCAGUGCAAGUA- -5'
11138 5' -54.6 NC_002794.1 + 192431 0.67 0.944825
Target:  5'- gGUCCGCGGC-CGGcgCGUCGCGcgCc- -3'
miRNA:   3'- -CGGGCGUCGaGCUa-GCAGUGCaaGua -5'
11138 5' -54.6 NC_002794.1 + 179454 0.67 0.944825
Target:  5'- -aCCGC--CUCGGUCGUgAUGUUCAg -3'
miRNA:   3'- cgGGCGucGAGCUAGCAgUGCAAGUa -5'
11138 5' -54.6 NC_002794.1 + 72059 0.67 0.930504
Target:  5'- aCCCGCAGC-CGGUUGccCGCGUgcccuUCGUa -3'
miRNA:   3'- cGGGCGUCGaGCUAGCa-GUGCA-----AGUA- -5'
11138 5' -54.6 NC_002794.1 + 41258 0.68 0.925259
Target:  5'- cGCCgGCGGCcCG-UCGUCGCGcUCc- -3'
miRNA:   3'- -CGGgCGUCGaGCuAGCAGUGCaAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.