miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11138 5' -54.6 NC_002794.1 + 115095 0.75 0.555809
Target:  5'- cGCCCGCAGC-CGcgCGUcCGCGUcgUCAc -3'
miRNA:   3'- -CGGGCGUCGaGCuaGCA-GUGCA--AGUa -5'
11138 5' -54.6 NC_002794.1 + 13126 0.72 0.717301
Target:  5'- cGCCgCGCGGCUCGcUCG-CGCGggUCGUc -3'
miRNA:   3'- -CGG-GCGUCGAGCuAGCaGUGCa-AGUA- -5'
11138 5' -54.6 NC_002794.1 + 138563 0.72 0.756152
Target:  5'- cGCCCGCuccgucgucGCUCGAUCGagGCGcgUCGg -3'
miRNA:   3'- -CGGGCGu--------CGAGCUAGCagUGCa-AGUa -5'
11138 5' -54.6 NC_002794.1 + 52813 0.7 0.827256
Target:  5'- cGCCgGCAGCUCGuccugccguUCGUagaggccggucagCACGUUCGc -3'
miRNA:   3'- -CGGgCGUCGAGCu--------AGCA-------------GUGCAAGUa -5'
11138 5' -54.6 NC_002794.1 + 195123 0.7 0.836379
Target:  5'- cGCCCGCGGCgCGcgCGggcUCGCGUaCAc -3'
miRNA:   3'- -CGGGCGUCGaGCuaGC---AGUGCAaGUa -5'
11138 5' -54.6 NC_002794.1 + 32120 0.7 0.852391
Target:  5'- aGCCCGCA-CUCG-UCGaUCACGaUCAc -3'
miRNA:   3'- -CGGGCGUcGAGCuAGC-AGUGCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 191011 0.69 0.867614
Target:  5'- aUCgGCcGUUCGAUCGgCACGUUCAg -3'
miRNA:   3'- cGGgCGuCGAGCUAGCaGUGCAAGUa -5'
11138 5' -54.6 NC_002794.1 + 23775 0.69 0.874914
Target:  5'- gGCCCG-AGCgagCGAUCGUCACcaUUUAUa -3'
miRNA:   3'- -CGGGCgUCGa--GCUAGCAGUGc-AAGUA- -5'
11138 5' -54.6 NC_002794.1 + 106843 0.69 0.894854
Target:  5'- gGCCUGCGGCuccgccuacaacaUCGAgcUCGUCGCcUUCGg -3'
miRNA:   3'- -CGGGCGUCG-------------AGCU--AGCAGUGcAAGUa -5'
11138 5' -54.6 NC_002794.1 + 175431 0.69 0.895509
Target:  5'- -gCCGCGGCgcagaCGAUCGUCGuCGaUCAa -3'
miRNA:   3'- cgGGCGUCGa----GCUAGCAGU-GCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 82115 0.69 0.895509
Target:  5'- cCCCGCAGCcuccUCGGcgugggCGUCACGUgggCGg -3'
miRNA:   3'- cGGGCGUCG----AGCUa-----GCAGUGCAa--GUa -5'
11138 5' -54.6 NC_002794.1 + 104626 0.69 0.895509
Target:  5'- gGCCaGCAGCUCG-UUGUCGCGcgCc- -3'
miRNA:   3'- -CGGgCGUCGAGCuAGCAGUGCaaGua -5'
11138 5' -54.6 NC_002794.1 + 71399 0.68 0.908108
Target:  5'- gGUCUGCGGCUCGGgccggccgUCGUCcaGCGUggacUCGUa -3'
miRNA:   3'- -CGGGCGUCGAGCU--------AGCAG--UGCA----AGUA- -5'
11138 5' -54.6 NC_002794.1 + 136323 0.68 0.908108
Target:  5'- cGCCCGCAGCUcuucucgguggCGGgccagCGUgGCGUUgAg -3'
miRNA:   3'- -CGGGCGUCGA-----------GCUa----GCAgUGCAAgUa -5'
11138 5' -54.6 NC_002794.1 + 181505 0.68 0.908108
Target:  5'- aGCCCGaC-GCUCGuccacGUCGUC-CGUUCGc -3'
miRNA:   3'- -CGGGC-GuCGAGC-----UAGCAGuGCAAGUa -5'
11138 5' -54.6 NC_002794.1 + 50830 0.68 0.908108
Target:  5'- cCCCGCc-CUCGggCGUCGCGaUCAa -3'
miRNA:   3'- cGGGCGucGAGCuaGCAGUGCaAGUa -5'
11138 5' -54.6 NC_002794.1 + 43524 0.68 0.919778
Target:  5'- cGCCgGUAGCUCGcgagccCGUCcACGUUCc- -3'
miRNA:   3'- -CGGgCGUCGAGCua----GCAG-UGCAAGua -5'
11138 5' -54.6 NC_002794.1 + 131878 0.68 0.925259
Target:  5'- gGCgCCGCGGCcucaucUCGGUCGcgCGCGggCAc -3'
miRNA:   3'- -CG-GGCGUCG------AGCUAGCa-GUGCaaGUa -5'
11138 5' -54.6 NC_002794.1 + 41258 0.68 0.925259
Target:  5'- cGCCgGCGGCcCG-UCGUCGCGcUCc- -3'
miRNA:   3'- -CGGgCGUCGaGCuAGCAGUGCaAGua -5'
11138 5' -54.6 NC_002794.1 + 72059 0.67 0.930504
Target:  5'- aCCCGCAGC-CGGUUGccCGCGUgcccuUCGUa -3'
miRNA:   3'- cGGGCGUCGaGCUAGCa-GUGCA-----AGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.